Gene detail

Detailed information of evm.model.Ap13.900 in Astrangia poculata

Genomic Location: Ap13:9298395...9316784
NR annotation: CAH3028258.1, unnamed protein product, partial [Porites evermanni]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.900

atgctgcatatttggggttttctatcggtgcttggcgtggctttagcaagtggatctgcttcaccagcctggggctacggaaagtctacaagccaagtgccgggcccagctgattggaagaaagtggcaccacaatgcgctggcttggcccagtctcccatcgatcttgaccgcttctcgttgaagactaatatttgggaagagaatttgacgatacagtttgataatgacgatggtttgattgctggtacactaatgaacaacggtcatgcaccaactctggcaattgacaaatctcttggatctgcaactcttagcgggggtccagtgggggactccgtgtatcaactggaacaacttcagtttcattttggatgttcttcgtttcaaggatctgagcacactgtttctggcagttcgtatccggtcgaggtacatctcgtattttataacaccaggtacacagatttgttaaaggccgctgacaagcctgatggacttactatgttgggagcattttttgaaggcctgtttatatggaagagagttgtccctgacggcaaaaaccatggcggccagccaaaggaatacaatgaatatttttctgctaaaaagtacgtcgaggatgtttcattcaacaaagtagatgacactaatgacagggagcagggcgaagaagaagctagcgggtctgaatccgaaataagcaagttttcgaaaactagtcgggcaaacaaacaagcattcgccctgggttcaaaggacaatgtaattttgggaagactgcagagtaaatttcagtggatcatccaagaattaaaaagtaccgcagtagtaaaaagtgacggtatattcctaaaagacctggtacccgccttgaaaaatggatctccgtactatacctaccaaggttcccttaccaccccaccctgctaccaatcagtacgatggattgtattatcagggacagcgccactcagctcttcacagttgattgccttcaatcgactccagtcttcaaccggttacggcgctggcaagatgtgcaacaactttagaccacatcaacatctgattcaaggtaatcgcggtttaaagcgatctggctttcaacgcggggtgtcgtacgcaaattttcaagttcacaaatttcaacaacttcaaggatctctgttagattcttcttgtgaagtgcttcaagctaaagaatgcggtctggcctgtgttaataatccgccgtgtgtttcgttcaatattgctgggtcgccaaatgaaaatggaaaactgcgatgcgaactgttgagtgaagacaggttcagaagttccaataaactgaccgtttcacaacattttcaccattacagcataaagacaccttgctcaagcagtccctgtaaaaacggcgctacttgcatcccaaattacgaagaggacacatatcattgtgcttgcgcgccgggatatacggattaccattgcacgacagatgtagacgaatgctccagtgttccctgtatgaatggaggtttttgtactgacctagtcaatggatatcaatgcacgtgtcagccggggtttatgggagtcgtttgtcaagcagcgtgtctagctcctttgggaatggaaaactttaaaataacacatgcacagatttcagcgtcatctcaatataatggatatcacactccaaaccaagggaggctgcactacatgggtgctggattgtacgtcccatcgtggtctgcaggagcgaataatctatatcagtggtttcaaatcgatcttagaattgagacaactgttacttttgtggcaacccagggaagacatgcatacaaccaatgggtgaccaagtacaagttacaatacagcaacgatggaaattcatttcaggtttacaagcagcaaggggagaactcagtcaaggtgtttgttggaaacagtgatactggcaccgtggtaaaacaccctttgattccaccaatcaaagcgcgatacatcaggctgatacccacagaatggaacaatcacatctcaatgagaatggaactctatggctgttttgaagagatgcaagcccttggtttggaaagcggtgccataagagacccgcaaatgactgcttcatcagactttgatatttaccacagcccaacgcgagcgaggttgcacactaaggaaaccagcatctatgcacgcggtgcttggtcaagtttgacaaacgattttaaccaatggcttcaagttgatcttggtaaagtcacatctgtgacacatgttgctacacagggaaggaattcctactctccggcacagatgataacgaaatacaagttgcagttcagcgacgatggagcaacattcttgttttacaagagacaggaagagtctacagacgcgggacactgtcaccagtttcacttcaagagcctaaaggcatatggaagctacaaaaattggtccaattttgttaaaaatcaacatgcaagtgtactgaagctataa

Transcript

evm.model.Ap13.900

ATGCTGCATATTTGGGGTTTTCTATCGGTGCTTGGCGTGGCTTTAGCAAGTGGATCTGCTTCACCAGCCTGGGGCTACGGAAAGTCTACAAGCCAAGTGCCGGGCCCAGCTGATTGGAAGAAAGTGGCACCACAATGCGCTGGCTTGGCCCAGTCTCCCATCGATCTTGACCGCTTCTCGTTGAAGACTAATATTTGGGAAGAGAATTTGACGATACAGTTTGATAATGACGATGGTTTGATTGCTGGTACACTAATGAACAACGGTCATGCACCAACTCTGGCAATTGACAAATCTCTTGGATCTGCAACTCTTAGCGGGGGTCCAGTGGGGGACTCCGTGTATCAACTGGAACAACTTCAGTTTCATTTTGGATGTTCTTCGTTTCAAGGATCTGAGCACACTGTTTCTGGCAGTTCGTATCCGGTCGAGGTACATCTCGTATTTTATAACACCAGGTACACAGATTTGTTAAAGGCCGCTGACAAGCCTGATGGACTTACTATGTTGGGAGCATTTTTTGAAGGCCTGTTTATATGGAAGAGAGTTGTCCCTGACGGCAAAAACCATGGCGGCCAGCCAAAGGAATACAATGAATATTTTTCTGCTAAAAAGTACGTCGAGGATGTTTCATTCAACAAAGTAGATGACACTAATGACAGGGAGCAGGGCGAAGAAGAAGCTAGCGGGTCTGAATCCGAAATAAGCAAGTTTTCGAAAACTAGTCGGGCAAACAAACAAGCATTCGCCCTGGGTTCAAAGGACAATGTAATTTTGGGAAGACTGCAGAGTAAATTTCAGTGGATCATCCAAGAATTAAAAAGTACCGCAGTAGTAAAAAGTGACGGTATATTCCTAAAAGACCTGGTACCCGCCTTGAAAAATGGATCTCCGTACTATACCTACCAAGGTTCCCTTACCACCCCACCCTGCTACCAATCAGTACGATGGATTGTATTATCAGGGACAGCGCCACTCAGCTCTTCACAGTTGATTGCCTTCAATCGACTCCAGTCTTCAACCGGTTACGGCGCTGGCAAGATGTGCAACAACTTTAGACCACATCAACATCTGATTCAAGGTAATCGCGGTTTAAAGCGATCTGGCTTTCAACGCGGGGTGTCGTACGCAAATTTTCAAGTTCACAAATTTCAACAACTTCAAGGATCTCTGTTAGATTCTTCTTGTGAAGTGCTTCAAGCTAAAGAATGCGGTCTGGCCTGTGTTAATAATCCGCCGTGTGTTTCGTTCAATATTGCTGGGTCGCCAAATGAAAATGGAAAACTGCGATGCGAACTGTTGAGTGAAGACAGGTTCAGAAGTTCCAATAAACTGACCGTTTCACAACATTTTCACCATTACAGCATAAAGACACCTTGCTCAAGCAGTCCCTGTAAAAACGGCGCTACTTGCATCCCAAATTACGAAGAGGACACATATCATTGTGCTTGCGCGCCGGGATATACGGATTACCATTGCACGACAGATGTAGACGAATGCTCCAGTGTTCCCTGTATGAATGGAGGTTTTTGTACTGACCTAGTCAATGGATATCAATGCACGTGTCAGCCGGGGTTTATGGGAGTCGTTTGTCAAGCAGCGTGTCTAGCTCCTTTGGGAATGGAAAACTTTAAAATAACACATGCACAGATTTCAGCGTCATCTCAATATAATGGATATCACACTCCAAACCAAGGGAGGCTGCACTACATGGGTGCTGGATTGTACGTCCCATCGTGGTCTGCAGGAGCGAATAATCTATATCAGTGGTTTCAAATCGATCTTAGAATTGAGACAACTGTTACTTTTGTGGCAACCCAGGGAAGACATGCATACAACCAATGGGTGACCAAGTACAAGTTACAATACAGCAACGATGGAAATTCATTTCAGGTTTACAAGCAGCAAGGGGAGAACTCAGTCAAGGTGTTTGTTGGAAACAGTGATACTGGCACCGTGGTAAAACACCCTTTGATTCCACCAATCAAAGCGCGATACATCAGGCTGATACCCACAGAATGGAACAATCACATCTCAATGAGAATGGAACTCTATGGCTGTTTTGAAGAGATGCAAGCCCTTGGTTTGGAAAGCGGTGCCATAAGAGACCCGCAAATGACTGCTTCATCAGACTTTGATATTTACCACAGCCCAACGCGAGCGAGGTTGCACACTAAGGAAACCAGCATCTATGCACGCGGTGCTTGGTCAAGTTTGACAAACGATTTTAACCAATGGCTTCAAGTTGATCTTGGTAAAGTCACATCTGTGACACATGTTGCTACACAGGGAAGGAATTCCTACTCTCCGGCACAGATGATAACGAAATACAAGTTGCAGTTCAGCGACGATGGAGCAACATTCTTGTTTTACAAGAGACAGGAAGAGTCTACAGACGCGGGACACTGTCACCAGTTTCACTTCAAGAGCCTAAAGGCATATGGAAGCTACAAAAATTGGTCCAATTTTGTTAAAAATCAACATGCAAGTGTACTGAAGCTATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P00451	Coagulation factor VIII OS=Homo sapiens OX=9606 GN=F8 PE=1 SV=1
Q58L91	Venom prothrombin activator oscutarin-C non-catalytic subunit OS=Oxyuranus scutellatus OX=8668 PE=1 SV=1
Q593B6	Coagulation factor V OS=Pseudonaja textilis OX=8673 GN=F5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000021 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF00194 all species →	Carb_anhydrase	Eukaryotic-type carbonic anhydrase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR018338 all species →	Conserved_site	Carbonic anhydrase, alpha-class, conserved site	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR001148 all species →	Domain	Alpha carbonic anhydrase domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR036398 all species →	Homologous_superfamily	Alpha carbonic anhydrase domain superfamily	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24543 all species →	MULTICOPPER OXIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004089 all species →	Molecular Function	carbonate dehydratase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08617	ADAMTS1; a disintegrin and metalloproteinase with thrombospondin motifs 1	EC:3.4.24.-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.