Detailed information of evm.model.Ap13.908 in Astrangia poculata

Genomic Location: Ap13:9489192...9493666
NR annotation: CAH3145206.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O82201AP-4 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At2g19790 PE=1 SV=1
Q3ZBB6AP-4 complex subunit sigma-1 OS=Bos taurus OX=9913 GN=AP4S1 PE=2 SV=1
Q9Y587AP-4 complex subunit sigma-1 OS=Homo sapiens OX=9606 GN=AP4S1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001033 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01217
all species →		Clat_adaptor_sClathrin adaptor complex small chainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR016635
all species →		FamilyAdaptor protein complex, sigma subunitInterproscan
IPR022775
all species →		DomainAP complex, mu/sigma subunitInterproscan
IPR011012
all species →		Homologous_superfamilyLongin-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11753
all species →		ADAPTOR COMPLEXES SMALL SUBUNIT FAMILYInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0015031
all species →		Biological Processprotein transportInterproscan
GO:0016192
all species →		Biological Processvesicle-mediated transportInterproscan
GO:0043231
all species →		Cellular Componentintracellular membrane-bounded organelleInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12403AP4S1; AP-4 complex subunit sigma-1-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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