Detailed information of evm.model.Ap13.956 in Astrangia poculata

Genomic Location: Ap13:9912132...9918346
NR annotation: XP_020606996.1, protein SDE2 homolog [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8K1J5Splicing regulator SDE2 OS=Mus musculus OX=10090 GN=Sde2 PE=1 SV=1
Q6IQ49Splicing regulator SDE2 OS=Homo sapiens OX=9606 GN=SDE2 PE=1 SV=1
Q5RET9Splicing regulator SDE2 OS=Pongo abelii OX=9601 GN=SDE2 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005684 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13019
all species →		Sde2_N_UbiSilencing defective 2 N-terminal ubiquitin domainDomainInterproscan
PF13297
all species →		SDE2_2CReplication stress response SDE2 C-terminalDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR024974
all species →		DomainSde2, N-terminal ubiquitin domainInterproscan
IPR025086
all species →		DomainSDE2-like, C-terminal domainInterproscan
IPR051421
all species →		FamilyRNA Processing and DNA Damage Response RegulatorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12786
all species →		SPLICING FACTOR SF3A-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K25059SDE2; replication stress response regulator SDE2-DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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