Detailed information of evm.model.Ap13.989 in Astrangia poculata

Genomic Location: Ap13:10285284...10314647
NR annotation: CAH3145110.1, unnamed protein product, partial [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P47990Xanthine dehydrogenase/oxidase OS=Gallus gallus OX=9031 GN=XDH PE=1 SV=1
P47989Xanthine dehydrogenase/oxidase OS=Homo sapiens OX=9606 GN=XDH PE=1 SV=4
P80457Xanthine dehydrogenase/oxidase OS=Bos taurus OX=9913 GN=XDH PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001294 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01315
all species →
Ald_Xan_dh_CAldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domainDomainInterproscan
PF20256
all species →
MoCoBD_2Molybdopterin cofactor-binding domainDomainInterproscan
PF01799
all species →
Fer2_2[2Fe-2S] binding domainDomainInterproscan
PF00941
all species →
FAD_binding_5FAD binding domain in molybdopterin dehydrogenaseFamilyInterproscan
PF03450
all species →
CO_deh_flav_CCO dehydrogenase flavoprotein C-terminal domainDomainInterproscan
PF02738
all species →
MoCoBD_1Molybdopterin cofactor-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036884
all species →
Homologous_superfamily[2Fe-2S]-binding domain superfamilyInterproscan
IPR016167
all species →
Homologous_superfamilyFAD-binding, type PCMH, subdomain 1Interproscan
IPR022407
all species →
Binding_siteOxidoreductase, molybdopterin binding siteInterproscan
IPR016208
all species →
FamilyAldehyde oxidase/xanthine dehydrogenase-likeInterproscan
IPR036318
all species →
Homologous_superfamilyFAD-binding, type PCMH-like superfamilyInterproscan
IPR036683
all species →
Homologous_superfamilyCO dehydrogenase flavoprotein, C-terminal domain superfamilyInterproscan
IPR037165
all species →
Homologous_superfamilyAldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamilyInterproscan
IPR000674
all species →
DomainAldehyde oxidase/xanthine dehydrogenase, a/b hammerheadInterproscan
IPR016169
all species →
Homologous_superfamilyFAD-binding, type PCMH, subdomain 2Interproscan
IPR046867
all species →
DomainAldehyde oxidase/xanthine dehydrogenase, second molybdopterin binding domainInterproscan
IPR002888
all species →
Domain[2Fe-2S]-bindingInterproscan
IPR002346
all species →
DomainMolybdopterin dehydrogenase, FAD-bindingInterproscan
IPR036856
all species →
Homologous_superfamilyAldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamilyInterproscan
IPR016166
all species →
DomainFAD-binding domain, PCMH-typeInterproscan
IPR005107
all species →
DomainCO dehydrogenase flavoprotein, C-terminalInterproscan
IPR008274
all species →
DomainAldehyde oxidase/xanthine dehydrogenase, first molybdopterin binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11908
all species →
XANTHINE DEHYDROGENASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0043546
all species →
Molecular Functionmolybdopterin cofactor bindingInterproscan
GO:0005506
all species →
Molecular Functioniron ion bindingInterproscan
GO:0016491
all species →
Molecular Functionoxidoreductase activityInterproscan
GO:0050660
all species →
Molecular Functionflavin adenine dinucleotide bindingInterproscan
GO:0046872
all species →
Molecular Functionmetal ion bindingInterproscan
GO:0071949
all species →
Molecular FunctionFAD bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00106XDH; xanthine dehydrogenase/oxidaseEC:1.17.1.4
EC:1.17.3.2
Exosomeko04147deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap13.989 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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