Gene detail

Detailed information of evm.model.Ap14.10 in Astrangia poculata

Genomic Location: Ap14:96575...103499
NR annotation: XP_020624906.1, BRISC and BRCA1-A complex member 1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap14.10

atgaacaagagatacaaactcttaataaaggcaaagtcaacaggtaatcctgaattatggagtctctacaagcagaagagactagaggtgaaaaagctattaaagagtgctgaagctgcttactggcataatttatttcaagaagctaccaaccctaatgaattttggaaattgactaaccaagttttaagaaaacacaaagccaaaagcatcggtccaatctgcgatcgcaaccacgacggggtgatattaacccatgacttaaagaaggctgagtatttcaatgacttctttgtgaatgtcagtgaagacctcactaagcaactcgatcctttggacctctcatccctaaacacctttatcactagaattaacacctaccagagactatacttacttgaactgggaactgagacttggagaaatgcactggacaagggccagaaagtgggtgtcctttttatcgattttcggaaagcttttgacactgtgaaccatactatcctacaagaaaagctaaaagccattggtgtatcaggtgacctgctttcctggcttgatgattatatgtctgcacgtaagcagtttgtccaattatcagaatatcagtccgagcccaaaaccattacgtttggagtcccccaaggctcaatattagggcccaaattattttcaatcttcgtaaacgaccttcctgaatcgataacaagtggtaatgtattcatgtttgctgatgataccacaatttacacaattggcaaggacatcgacaatatcatcctgacactacaatccattttagaccaggtatacacctggtgtcagtctaacagattaatagcccacgaatcgaagacggaagccctgataatttcaagacagagctttattggtcccctgcgacgtttgacttacggcagtagcactattgagtacaaacaatcatccaaatgtcttgggttaacaatcgacaacaagctatcatggtatgaacacatcgggaacgttttctggggatcttgttctccagctttgttagatgatatagaccgaattcatttgagagcaacaagaattattaatagtctaccgcattacatccatagtgattacatcaggaacgctccatattggaacccaattgtttcattttacattaagagacttctagttattacgcacaatatttaccatggaaatagcatcgatcctctaaaggacttactagtgaaacccgagtctacttataactttagaaaatccttaaatgttgaggttgatagaccaagaacagaaatggaagataaaccaagtgaagcatgtaatgttgagccaaccaaagatcaagttgaacccaaagacacttccttaaaatttgttgaagaagtacgtgtcagtggtgatggtgaagaagagccagcagatggaaatggctttacttcacagctgaagactggaaaaagagatagtttgtcattaagttctgagggttcatctgaaaatgacagcctgaggaacaaagttccacatgtcaactgtccagaacacattattctatgtctggatttgtgccctgaaatgaaatctatgtcttttcagtgtaaaagtgttccagatagcacaatatttcaactggtccagaggtcaatacaaatttttgttaaaaccaagtctaaaatgaatgctaatcatcagttttctatcatggtcctggatgataaggcatcatggtacaaacatttcaccagtgatgtggaagctatctgcagcactttgaaccacctcaacccagaggaggaaatttcaacacaggagcattcagaaatgtgtgatctctttgaagcagtgaaggaaaacgtacagttgccacttgttgaagacattttattgcctcctccatacgtggtacgacttataatagtgtatggacgctcacactgcacgcctcatgtgtctactgaagcaaagcagatattgtctacacttctggaatcaccatatttctttcttgatgttctgtatgttcatgagcttccatcggaaatgaatctgtgcaaagaaatatatgattacttctgtgacatggatgaagaggaagaaggctatatgttggaagtgtcacgcagtacaactcgtctctttgaccacatggcggcgttacttgctcatccgttacagcgacctaagcagcgtgacacattttacaaacttactcgacgagaagatgaagagcccattttatag

Transcript

evm.model.Ap14.10

ATGAACAAGAGATACAAACTCTTAATAAAGGCAAAGTCAACAGGTAATCCTGAATTATGGAGTCTCTACAAGCAGAAGAGACTAGAGGTGAAAAAGCTATTAAAGAGTGCTGAAGCTGCTTACTGGCATAATTTATTTCAAGAAGCTACCAACCCTAATGAATTTTGGAAATTGACTAACCAAGTTTTAAGAAAACACAAAGCCAAAAGCATCGGTCCAATCTGCGATCGCAACCACGACGGGGTGATATTAACCCATGACTTAAAGAAGGCTGAGTATTTCAATGACTTCTTTGTGAATGTCAGTGAAGACCTCACTAAGCAACTCGATCCTTTGGACCTCTCATCCCTAAACACCTTTATCACTAGAATTAACACCTACCAGAGACTATACTTACTTGAACTGGGAACTGAGACTTGGAGAAATGCACTGGACAAGGGCCAGAAAGTGGGTGTCCTTTTTATCGATTTTCGGAAAGCTTTTGACACTGTGAACCATACTATCCTACAAGAAAAGCTAAAAGCCATTGGTGTATCAGGTGACCTGCTTTCCTGGCTTGATGATTATATGTCTGCACGTAAGCAGTTTGTCCAATTATCAGAATATCAGTCCGAGCCCAAAACCATTACGTTTGGAGTCCCCCAAGGCTCAATATTAGGGCCCAAATTATTTTCAATCTTCGTAAACGACCTTCCTGAATCGATAACAAGTGGTAATGTATTCATGTTTGCTGATGATACCACAATTTACACAATTGGCAAGGACATCGACAATATCATCCTGACACTACAATCCATTTTAGACCAGGTATACACCTGGTGTCAGTCTAACAGATTAATAGCCCACGAATCGAAGACGGAAGCCCTGATAATTTCAAGACAGAGCTTTATTGGTCCCCTGCGACGTTTGACTTACGGCAGTAGCACTATTGAGTACAAACAATCATCCAAATGTCTTGGGTTAACAATCGACAACAAGCTATCATGGTATGAACACATCGGGAACGTTTTCTGGGGATCTTGTTCTCCAGCTTTGTTAGATGATATAGACCGAATTCATTTGAGAGCAACAAGAATTATTAATAGTCTACCGCATTACATCCATAGTGATTACATCAGGAACGCTCCATATTGGAACCCAATTGTTTCATTTTACATTAAGAGACTTCTAGTTATTACGCACAATATTTACCATGGAAATAGCATCGATCCTCTAAAGGACTTACTAGTGAAACCCGAGTCTACTTATAACTTTAGAAAATCCTTAAATGTTGAGGTTGATAGACCAAGAACAGAAATGGAAGATAAACCAAGTGAAGCATGTAATGTTGAGCCAACCAAAGATCAAGTTGAACCCAAAGACACTTCCTTAAAATTTGTTGAAGAAGTACGTGTCAGTGGTGATGGTGAAGAAGAGCCAGCAGATGGAAATGGCTTTACTTCACAGCTGAAGACTGGAAAAAGAGATAGTTTGTCATTAAGTTCTGAGGGTTCATCTGAAAATGACAGCCTGAGGAACAAAGTTCCACATGTCAACTGTCCAGAACACATTATTCTATGTCTGGATTTGTGCCCTGAAATGAAATCTATGTCTTTTCAGTGTAAAAGTGTTCCAGATAGCACAATATTTCAACTGGTCCAGAGGTCAATACAAATTTTTGTTAAAACCAAGTCTAAAATGAATGCTAATCATCAGTTTTCTATCATGGTCCTGGATGATAAGGCATCATGGTACAAACATTTCACCAGTGATGTGGAAGCTATCTGCAGCACTTTGAACCACCTCAACCCAGAGGAGGAAATTTCAACACAGGAGCATTCAGAAATGTGTGATCTCTTTGAAGCAGTGAAGGAAAACGTACAGTTGCCACTTGTTGAAGACATTTTATTGCCTCCTCCATACGTGGTACGACTTATAATAGTGTATGGACGCTCACACTGCACGCCTCATGTGTCTACTGAAGCAAAGCAGATATTGTCTACACTTCTGGAATCACCATATTTCTTTCTTGATGTTCTGTATGTTCATGAGCTTCCATCGGAAATGAATCTGTGCAAAGAAATATATGATTACTTCTGTGACATGGATGAAGAGGAAGAAGGCTATATGTTGGAAGTGTCACGCAGTACAACTCGTCTCTTTGACCACATGGCGGCGTTACTTGCTCATCCGTTACAGCGACCTAAGCAGCGTGACACATTTTACAAACTTACTCGACGAGAAGATGAAGAGCCCATTTTATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DJG6	BRISC and BRCA1-A complex member 1 OS=Xenopus laevis OX=8355 GN=babam1 PE=2 SV=1
Q5M8J0	BRISC and BRCA1-A complex member 1 OS=Xenopus tropicalis OX=8364 GN=babam1 PE=2 SV=1
Q6AXK4	BRISC and BRCA1-A complex member 1 OS=Danio rerio OX=7955 GN=babam1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004338 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR026126 all species →	Family	BRISC and BRCA1-A complex member 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15660 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0007095 all species →	Biological Process	mitotic G2 DNA damage checkpoint signaling	Interproscan
GO:0016604 all species →	Cellular Component	nuclear body	Interproscan
GO:0045739 all species →	Biological Process	positive regulation of DNA repair	Interproscan
GO:0070531 all species →	Cellular Component	BRCA1-A complex	Interproscan
GO:0070552 all species →	Cellular Component	BRISC complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap14.10.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.