Gene detail

Detailed information of evm.model.Ap14.1057 in Astrangia poculata

Genomic Location: Ap14:11347695...11379386
NR annotation: XP_020619589.1, terminal uridylyltransferase 4-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap14.1057

atggaaaattctgaaagtaacactgagtgttctttggagagcccgaatggcttgcataaagatgacgaaacattgcatcaggctcaagaagggaaagtcagtgagacggaaggtgcttcattcaatgacaagacgagaacagcaaagaatgaagataggaaggaggatagtggaatatcaagtgaagaccagacgagtaaacaacagtcctctaaaaagacaatgaaggaactggagtctcactttgttgtgcctgctgataaactgaaggattcaagtaaatgcttagatgctcctttttactgtgagctgtgtgaattaaaactgccaaatcttgccaaatgtcaaagtcatgttagaaccaagggtcacaaaagagcagtaaagaacaagggagagttttttgggctctcacaagttgccccaccctcagaacatcaaactttggctctgagcaagcttcttgattcagtatttttggaacatggtttgtgtcctgtgaagggtttacctacccgacaaagggttgcagaggatgttggcaagatagtgtgtaccaagattccagaatgttcagtctcaatttatggatcttcctttaccggctttggtttgaaggagagtgacgtcaatcttgatcttgccattccagatgaggtcaatgtgccccatgttctgttgtcaattttggatttgcttcagaaagacgagcattactgtgatgtgaaaagtgaatttgatgccaaggtgccaagaatattattcaaacacaaaacaagtggactggtttgtgagcttagccctggaaattttacagcttccaagactagttggttgttgaagaaatacagtgactttgatccacgtgtgagaactctggttgtagcactaagatactgggcaaggatctgtaacattgattgtcaatcagagggaggcctgccaggatactcgttggctctgatggttatccagttcttacaagagacaaaaccaccagttttgccaagatgggtgccatctgaagccattgacaaggacagcccagatgcgtcagaaacatttgttagtgataataaagagaacactgggagtttgtggtttcagttgtttaggttttacggtgttgactttgatattccgaacctggtgatttccatcaaagacccaatacctgtttcaagagagaagaagaaatggggccatcgtaggatagcggttgaagatccatttgctacaaaacggaatgttgcatgttcattaagtagtgacaaagcctatgactacttcttcacttgctggaaaaacagttttctgtatttcagttccttacctaatggtacacaaaatggaccagttacagatgtacagaaagagccatccaacctttctcacaagacaaacgaccacagtaaaacaggaaaaaacaagaaccaggaggacaaactattaaatgacgacgaggctatttttgaaatggatgacttagattctgcaacaaagcaagtgcagtcgctggatctctctagcagtgactgtaaagatgagactgcaaaaggtttaccaagcttggaaagcaatgatcaaaatgacgcagaaaatgaggtcaagataactttgagtggatctgattgtgaggatggcagtgactccagagctacagaaacaacatctgcagattcttgcatctccaatgctgtaaacaacaccacagattctactccacaggatgttgtatacagttttgatgccaaggatttcagaggaaacaataaaccagtaaagacctgttgttactgtaaggaggatggtcatgtcaaggaacagtgtccagatttgagaaagccatcactgagtagacttccacagatgactccaaggtttggtgcagtgttggattatgtttgcaagaagtgtagagctgattttgaatttgaaaactcagaagtttcatacagagagaaagtgttgcaaaatttagaagaatacatccaccaaatatttccagatgcaagactgttcttatttggctcatccaagaatggtttcggttttcgaaacagcgacattgacatttgcatgacatttgagaatcgagtcaaagaggacgtcaacaattttgttgatgtgatcattgaactttccaagctcttaaagaaacacaaagactgtagcaatgtgctggctattaccacagccaaggttcccattgtgaagttctaccttcgcagttgtaaacgcgaggctgatataagcctttacaacacacttgcgttggagaacaccaggatgctggctacgtatgctaaactggatgatcgtgttgtaacattgggttacgctgtgaaggtttttgcaaaggtgtgtgacattggagacgcctccaagggcagcctgtcatcgtatgcttacatcctcatgttacttcactacctgcaacagtgtaaccctccagtcattccagtgctacagaccctgtacacagataacaagcaacctgagaagattgtagatggctggaactgctggtttcaaagtgacctgaagaaaattaaaagcatttggaagcagaagaacgagaatacgtacagtgctggcctgctgtggtatggcttttttcggtactacactgaagtatttgactttgagcatgacgtggtatgttgcagaaggacaaaaaagctgacaaaatttgaaaagatgtggaccaaacatgtgtttgctattgaggacccatttaacctggaccacaacttgggcgctggtgtgacaaggaaaatggccaactatattctgaccacgttcatcagagggcgtgaacggtttggaattccacgacacgacatacccctggaactgtcacagcggtacttctttgatgtttactatctcacagatggctacgaggctccaaacgacagaaactgtcgtgtctgtggcaagatagggcacattgccagagattgtccacattcaaaggccaaccgaagagctgagcaaaagaaggaggaagaagaacgcagattgggaaaagagccaggcaagaaacctgacatgagccagaagcctttcgatgcccgtccaaggtcagcttctgctccgaacaaacagggacagaacaagaatgctgatagcagcaaacctctggctgcagctcagccaaagaaaattccgtctcgccaagaagtaaatgtctcgggtggaactaatctttcaagatctcaaccagactcgcaagttgttgtgtctcctttgaagggaagccagggcagcaaacctggaaaatatatttcagaaaatgtccgagaaacggttcaatccaagaaaccccatgtgcaattgcctgatcaaaatcttcagacggggctgacaagtgaaaatgtggaatatggtagtcaaaaaacagtgccagatgcacaacatgcccagacgagctctgtaaacagtgcttgtgttgggagtagtagcaaaacacccgtgacaggatcagtagaaacattgatgtcaatcaaaaatcctccatcacaggacctgactagtcaaccagcaagtgtgaaaccacctcctgggttttccacttcagatggcataggtcagatatctcatgtgtcaagtcaaggatcaccacaacgtttggctggaagtataacacagtctcctcctgtgaacatgccaccagctggtatatttgaggggcagcccattgtcgtgggtactccaccccggcaccaccctggcatgttcagtccacaaaatagtccatttgtaggttctccgatccaacatgacatgtggctaaggcaacaaggtggtgttatgatgagtcctcattccccacctgtgaggccacttgttccctatcctatgtcacctgagattcaccccatgcagcctcagcagcagtggagaggtgcttctgaaagcttgcttgttgatcctcttggctccccagttcgtggacaccaacgtcttacagagcacaaccatcacatgcttccccagagccctccaaacatttccagaaatgtcatgtggccgttatcaccaaacagccctcatcatttggccaatcatcaagacccagccatagtcatggagcagcagttttctctgccagggcatcatcctccatttcctcaaggcagctctcccagtgtgccgccacaccagacccaatttcctcctggttctcctccaggacctgccgttggtttaccacagcccgtgccacagcttccacaccaaggagcccctgtacaacctggaacccacatgacaggagaacagtttatcaaccttatacgggccgttgaagaagaatcgaaaaaagtggaagttgccccgacgaaattgccttcaaataatgagtttgagccaaaggaacttcacattactccaaagaatttgaaagttgccaagactcctgaagaacacaagttgctatcaaaactaagcaaggtgaagagcctttgggaaggcgacaccacccccgggttgcaaagcagttactccaattcagactcattcaaggagttagatcccactggacacgttaatcttctggaaccaagtgatatgggacacgctttcccggatacaaaattaccagaaaggagggaagcttgggtaacggttgctgaggaggaaagcaaacaagatggtacagatgcagtgcaggtggatcaggacggacgaaatgatcatgcaaatgaagaactgaacaactcagctttgttggcagaaggcaacagggcagtgccttctgaagccgttagcaaggaggaacggccctcatctaacagcctagtggcttcagatgagaaaatggaagcgcagtcaagcaaaagtgaccaacaacccttgcaaaaaagtgagcaacaacagtcatctgatgtggcagcctcatcaccgtctaaagaagccgctaagcaaaagcctgctaggcgtggtggtcgaggtagaaaacctaagggccccagacataacgaggctgctaatagcaccccagagaagcaagagaaacccatgacagggaaccaaaaccaagcaaaaagcagcccaggacgaagttacaatccgaaaacttatgatgacgttaaaggtgaccctgtcaaggcttcacctaaaaagccaagagctgagcgttctgaaggtaggcaaggtgacccgcaaagtgcccatcgtggtgcagaggctacaccacgtcagatgcctaaaactaaggaatcaccagttcatgaaaagggcggtgaaaaagcaggaccacaggcgaacaaacaagaccatgttaaaaatacacgaacaggaaaccccactaattcccctggggattctagtaaagggggagctcccaatcggggacgcagaagaccacctcgatcccgtaccagtaaagggagaacgggcgacgaaaagcaggatacaagaaatcgaagcaacagtacgccagagaaacgccaacctaaggactcataa

Transcript

evm.model.Ap14.1057

ATGGAAAATTCTGAAAGTAACACTGAGTGTTCTTTGGAGAGCCCGAATGGCTTGCATAAAGATGACGAAACATTGCATCAGGCTCAAGAAGGGAAAGTCAGTGAGACGGAAGGTGCTTCATTCAATGACAAGACGAGAACAGCAAAGAATGAAGATAGGAAGGAGGATAGTGGAATATCAAGTGAAGACCAGACGAGTAAACAACAGTCCTCTAAAAAGACAATGAAGGAACTGGAGTCTCACTTTGTTGTGCCTGCTGATAAACTGAAGGATTCAAGTAAATGCTTAGATGCTCCTTTTTACTGTGAGCTGTGTGAATTAAAACTGCCAAATCTTGCCAAATGTCAAAGTCATGTTAGAACCAAGGGTCACAAAAGAGCAGTAAAGAACAAGGGAGAGTTTTTTGGGCTCTCACAAGTTGCCCCACCCTCAGAACATCAAACTTTGGCTCTGAGCAAGCTTCTTGATTCAGTATTTTTGGAACATGGTTTGTGTCCTGTGAAGGGTTTACCTACCCGACAAAGGGTTGCAGAGGATGTTGGCAAGATAGTGTGTACCAAGATTCCAGAATGTTCAGTCTCAATTTATGGATCTTCCTTTACCGGCTTTGGTTTGAAGGAGAGTGACGTCAATCTTGATCTTGCCATTCCAGATGAGGTCAATGTGCCCCATGTTCTGTTGTCAATTTTGGATTTGCTTCAGAAAGACGAGCATTACTGTGATGTGAAAAGTGAATTTGATGCCAAGGTGCCAAGAATATTATTCAAACACAAAACAAGTGGACTGGTTTGTGAGCTTAGCCCTGGAAATTTTACAGCTTCCAAGACTAGTTGGTTGTTGAAGAAATACAGTGACTTTGATCCACGTGTGAGAACTCTGGTTGTAGCACTAAGATACTGGGCAAGGATCTGTAACATTGATTGTCAATCAGAGGGAGGCCTGCCAGGATACTCGTTGGCTCTGATGGTTATCCAGTTCTTACAAGAGACAAAACCACCAGTTTTGCCAAGATGGGTGCCATCTGAAGCCATTGACAAGGACAGCCCAGATGCGTCAGAAACATTTGTTAGTGATAATAAAGAGAACACTGGGAGTTTGTGGTTTCAGTTGTTTAGGTTTTACGGTGTTGACTTTGATATTCCGAACCTGGTGATTTCCATCAAAGACCCAATACCTGTTTCAAGAGAGAAGAAGAAATGGGGCCATCGTAGGATAGCGGTTGAAGATCCATTTGCTACAAAACGGAATGTTGCATGTTCATTAAGTAGTGACAAAGCCTATGACTACTTCTTCACTTGCTGGAAAAACAGTTTTCTGTATTTCAGTTCCTTACCTAATGGTACACAAAATGGACCAGTTACAGATGTACAGAAAGAGCCATCCAACCTTTCTCACAAGACAAACGACCACAGTAAAACAGGAAAAAACAAGAACCAGGAGGACAAACTATTAAATGACGACGAGGCTATTTTTGAAATGGATGACTTAGATTCTGCAACAAAGCAAGTGCAGTCGCTGGATCTCTCTAGCAGTGACTGTAAAGATGAGACTGCAAAAGGTTTACCAAGCTTGGAAAGCAATGATCAAAATGACGCAGAAAATGAGGTCAAGATAACTTTGAGTGGATCTGATTGTGAGGATGGCAGTGACTCCAGAGCTACAGAAACAACATCTGCAGATTCTTGCATCTCCAATGCTGTAAACAACACCACAGATTCTACTCCACAGGATGTTGTATACAGTTTTGATGCCAAGGATTTCAGAGGAAACAATAAACCAGTAAAGACCTGTTGTTACTGTAAGGAGGATGGTCATGTCAAGGAACAGTGTCCAGATTTGAGAAAGCCATCACTGAGTAGACTTCCACAGATGACTCCAAGGTTTGGTGCAGTGTTGGATTATGTTTGCAAGAAGTGTAGAGCTGATTTTGAATTTGAAAACTCAGAAGTTTCATACAGAGAGAAAGTGTTGCAAAATTTAGAAGAATACATCCACCAAATATTTCCAGATGCAAGACTGTTCTTATTTGGCTCATCCAAGAATGGTTTCGGTTTTCGAAACAGCGACATTGACATTTGCATGACATTTGAGAATCGAGTCAAAGAGGACGTCAACAATTTTGTTGATGTGATCATTGAACTTTCCAAGCTCTTAAAGAAACACAAAGACTGTAGCAATGTGCTGGCTATTACCACAGCCAAGGTTCCCATTGTGAAGTTCTACCTTCGCAGTTGTAAACGCGAGGCTGATATAAGCCTTTACAACACACTTGCGTTGGAGAACACCAGGATGCTGGCTACGTATGCTAAACTGGATGATCGTGTTGTAACATTGGGTTACGCTGTGAAGGTTTTTGCAAAGGTGTGTGACATTGGAGACGCCTCCAAGGGCAGCCTGTCATCGTATGCTTACATCCTCATGTTACTTCACTACCTGCAACAGTGTAACCCTCCAGTCATTCCAGTGCTACAGACCCTGTACACAGATAACAAGCAACCTGAGAAGATTGTAGATGGCTGGAACTGCTGGTTTCAAAGTGACCTGAAGAAAATTAAAAGCATTTGGAAGCAGAAGAACGAGAATACGTACAGTGCTGGCCTGCTGTGGTATGGCTTTTTTCGGTACTACACTGAAGTATTTGACTTTGAGCATGACGTGGTATGTTGCAGAAGGACAAAAAAGCTGACAAAATTTGAAAAGATGTGGACCAAACATGTGTTTGCTATTGAGGACCCATTTAACCTGGACCACAACTTGGGCGCTGGTGTGACAAGGAAAATGGCCAACTATATTCTGACCACGTTCATCAGAGGGCGTGAACGGTTTGGAATTCCACGACACGACATACCCCTGGAACTGTCACAGCGGTACTTCTTTGATGTTTACTATCTCACAGATGGCTACGAGGCTCCAAACGACAGAAACTGTCGTGTCTGTGGCAAGATAGGGCACATTGCCAGAGATTGTCCACATTCAAAGGCCAACCGAAGAGCTGAGCAAAAGAAGGAGGAAGAAGAACGCAGATTGGGAAAAGAGCCAGGCAAGAAACCTGACATGAGCCAGAAGCCTTTCGATGCCCGTCCAAGGTCAGCTTCTGCTCCGAACAAACAGGGACAGAACAAGAATGCTGATAGCAGCAAACCTCTGGCTGCAGCTCAGCCAAAGAAAATTCCGTCTCGCCAAGAAGTAAATGTCTCGGGTGGAACTAATCTTTCAAGATCTCAACCAGACTCGCAAGTTGTTGTGTCTCCTTTGAAGGGAAGCCAGGGCAGCAAACCTGGAAAATATATTTCAGAAAATGTCCGAGAAACGGTTCAATCCAAGAAACCCCATGTGCAATTGCCTGATCAAAATCTTCAGACGGGGCTGACAAGTGAAAATGTGGAATATGGTAGTCAAAAAACAGTGCCAGATGCACAACATGCCCAGACGAGCTCTGTAAACAGTGCTTGTGTTGGGAGTAGTAGCAAAACACCCGTGACAGGATCAGTAGAAACATTGATGTCAATCAAAAATCCTCCATCACAGGACCTGACTAGTCAACCAGCAAGTGTGAAACCACCTCCTGGGTTTTCCACTTCAGATGGCATAGGTCAGATATCTCATGTGTCAAGTCAAGGATCACCACAACGTTTGGCTGGAAGTATAACACAGTCTCCTCCTGTGAACATGCCACCAGCTGGTATATTTGAGGGGCAGCCCATTGTCGTGGGTACTCCACCCCGGCACCACCCTGGCATGTTCAGTCCACAAAATAGTCCATTTGTAGGTTCTCCGATCCAACATGACATGTGGCTAAGGCAACAAGGTGGTGTTATGATGAGTCCTCATTCCCCACCTGTGAGGCCACTTGTTCCCTATCCTATGTCACCTGAGATTCACCCCATGCAGCCTCAGCAGCAGTGGAGAGGTGCTTCTGAAAGCTTGCTTGTTGATCCTCTTGGCTCCCCAGTTCGTGGACACCAACGTCTTACAGAGCACAACCATCACATGCTTCCCCAGAGCCCTCCAAACATTTCCAGAAATGTCATGTGGCCGTTATCACCAAACAGCCCTCATCATTTGGCCAATCATCAAGACCCAGCCATAGTCATGGAGCAGCAGTTTTCTCTGCCAGGGCATCATCCTCCATTTCCTCAAGGCAGCTCTCCCAGTGTGCCGCCACACCAGACCCAATTTCCTCCTGGTTCTCCTCCAGGACCTGCCGTTGGTTTACCACAGCCCGTGCCACAGCTTCCACACCAAGGAGCCCCTGTACAACCTGGAACCCACATGACAGGAGAACAGTTTATCAACCTTATACGGGCCGTTGAAGAAGAATCGAAAAAAGTGGAAGTTGCCCCGACGAAATTGCCTTCAAATAATGAGTTTGAGCCAAAGGAACTTCACATTACTCCAAAGAATTTGAAAGTTGCCAAGACTCCTGAAGAACACAAGTTGCTATCAAAACTAAGCAAGGTGAAGAGCCTTTGGGAAGGCGACACCACCCCCGGGTTGCAAAGCAGTTACTCCAATTCAGACTCATTCAAGGAGTTAGATCCCACTGGACACGTTAATCTTCTGGAACCAAGTGATATGGGACACGCTTTCCCGGATACAAAATTACCAGAAAGGAGGGAAGCTTGGGTAACGGTTGCTGAGGAGGAAAGCAAACAAGATGGTACAGATGCAGTGCAGGTGGATCAGGACGGACGAAATGATCATGCAAATGAAGAACTGAACAACTCAGCTTTGTTGGCAGAAGGCAACAGGGCAGTGCCTTCTGAAGCCGTTAGCAAGGAGGAACGGCCCTCATCTAACAGCCTAGTGGCTTCAGATGAGAAAATGGAAGCGCAGTCAAGCAAAAGTGACCAACAACCCTTGCAAAAAAGTGAGCAACAACAGTCATCTGATGTGGCAGCCTCATCACCGTCTAAAGAAGCCGCTAAGCAAAAGCCTGCTAGGCGTGGTGGTCGAGGTAGAAAACCTAAGGGCCCCAGACATAACGAGGCTGCTAATAGCACCCCAGAGAAGCAAGAGAAACCCATGACAGGGAACCAAAACCAAGCAAAAAGCAGCCCAGGACGAAGTTACAATCCGAAAACTTATGATGACGTTAAAGGTGACCCTGTCAAGGCTTCACCTAAAAAGCCAAGAGCTGAGCGTTCTGAAGGTAGGCAAGGTGACCCGCAAAGTGCCCATCGTGGTGCAGAGGCTACACCACGTCAGATGCCTAAAACTAAGGAATCACCAGTTCATGAAAAGGGCGGTGAAAAAGCAGGACCACAGGCGAACAAACAAGACCATGTTAAAAATACACGAACAGGAAACCCCACTAATTCCCCTGGGGATTCTAGTAAAGGGGGAGCTCCCAATCGGGGACGCAGAAGACCACCTCGATCCCGTACCAGTAAAGGGAGAACGGGCGACGAAAAGCAGGATACAAGAAATCGAAGCAACAGTACGCCAGAGAAACGCCAACCTAAGGACTCATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5TAX3	Terminal uridylyltransferase 4 OS=Homo sapiens OX=9606 GN=TUT4 PE=1 SV=3
B2RX14	Terminal uridylyltransferase 4 OS=Mus musculus OX=10090 GN=Tut4 PE=1 SV=2
Q5BLK4	Terminal uridylyltransferase 7 OS=Mus musculus OX=10090 GN=Tut7 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003775 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03828 all species →	PAP_assoc	Cid1 family poly A polymerase	Family	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF19088 all species →	TUTase	TUTase nucleotidyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002058 all species →	Domain	PAP/25A-associated	Interproscan
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR045100 all species →	Domain	TUTase nucleotidyltransferase domain	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12271 all species →	POLY A POLYMERASE CID PAP -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016779 all species →	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0031123 all species →	Biological Process	RNA 3'-end processing	Interproscan
GO:0050265 all species →	Molecular Function	RNA uridylyltransferase activity	Interproscan
GO:0071076 all species →	Biological Process	RNA 3' uridylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13291	TUT; terminal uridylyltransferase	EC:2.7.7.52	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.