Genomic Location: Ap14:11349726...11379386
NR annotation: XP_020619589.1, terminal uridylyltransferase 4-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap14.1057.1.5f15dd86 |
| Transcript |
| evm.model.Ap14.1057.1.5f15dd86 |
| Protein |
| evm.model.Ap14.1057.1.5f15dd86 |
| UniProt accession | Description |
|---|---|
| Q5TAX3 | Terminal uridylyltransferase 4 OS=Homo sapiens OX=9606 GN=TUT4 PE=1 SV=3 |
| B2RX14 | Terminal uridylyltransferase 4 OS=Mus musculus OX=10090 GN=Tut4 PE=1 SV=2 |
| Q5BLK4 | Terminal uridylyltransferase 7 OS=Mus musculus OX=10090 GN=Tut7 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003775 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00098 all species → | zf-CCHC | Zinc knuckle | Domain | Interproscan |
| PF19088 all species → | TUTase | TUTase nucleotidyltransferase domain | Domain | Interproscan |
| PF03828 all species → | PAP_assoc | Cid1 family poly A polymerase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR043519 all species → | Homologous_superfamily | Nucleotidyltransferase superfamily | Interproscan |
| IPR001878 all species → | Domain | Zinc finger, CCHC-type | Interproscan |
| IPR045100 all species → | Domain | TUTase nucleotidyltransferase domain | Interproscan |
| IPR002058 all species → | Domain | PAP/25A-associated | Interproscan |
| IPR036875 all species → | Homologous_superfamily | Zinc finger, CCHC-type superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12271 all species → | POLY A POLYMERASE CID PAP -RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0016779 all species → | Molecular Function | nucleotidyltransferase activity | Interproscan |
| GO:0031123 all species → | Biological Process | RNA 3'-end processing | Interproscan |
| GO:0050265 all species → | Molecular Function | RNA uridylyltransferase activity | Interproscan |
| GO:0071076 all species → | Biological Process | RNA 3' uridylation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13291 | TUT; terminal uridylyltransferase | EC:2.7.7.52 | Enzymes with EC numbers | - | deepkoala |
Transcript abundance of evm.model.Ap14.1057.1.5f15dd86 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
