Detailed information of evm.model.Ap14.1126 in Astrangia poculata

Genomic Location: Ap14:12166934...12198121
NR annotation: XP_020625798.1, ATP-binding cassette sub-family A member 1-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P41233Phospholipid-transporting ATPase ABCA1 OS=Mus musculus OX=10090 GN=Abca1 PE=1 SV=4
O95477Phospholipid-transporting ATPase ABCA1 OS=Homo sapiens OX=9606 GN=ABCA1 PE=1 SV=3
Q9ESR9ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus OX=10116 GN=Abca2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000297 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00088
all species →
TrefoilTrefoil (P-type) domainDomainInterproscan
PF00005
all species →
ABC_tranABC transporterDomainInterproscan
PF12698
all species →
ABC2_membrane_3ABC-2 family transporter proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000519
all species →
DomainP-type trefoil domainInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR026082
all species →
FamilyABC transporter AInterproscan
IPR003439
all species →
DomainABC transporter-like, ATP-binding domainInterproscan
IPR044913
all species →
Homologous_superfamilyP-type trefoil domain superfamilyInterproscan
IPR017994
all species →
FamilyP-type trefoil, chordataInterproscan
IPR013525
all species →
DomainABC-2 type transporter, transmembrane domainInterproscan
IPR017871
all species →
Conserved_siteABC transporter-like, conserved siteInterproscan
IPR003593
all species →
DomainAAA+ ATPase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19229
all species →
ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005319
all species →
Molecular Functionlipid transporter activityInterproscan
GO:0006869
all species →
Biological Processlipid transportInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0042626
all species →
Molecular FunctionATPase-coupled transmembrane transporter activityInterproscan
GO:0043231
all species →
Cellular Componentintracellular membrane-bounded organelleInterproscan
GO:0055085
all species →
Biological Processtransmembrane transportInterproscan
GO:0140359
all species →
Molecular FunctionABC-type transporter activityInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0016887
all species →
Molecular FunctionATP hydrolysis activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K05641ABCA1; ATP-binding cassette, subfamily A (ABC1), member 1-Transportersko02000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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