Detailed information of evm.model.Ap14.1303 in Astrangia poculata

Genomic Location: Ap14:14047746...14063020
NR annotation: XP_020617190.1, YTH domain-containing protein 1-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q96MU7YTH domain-containing protein 1 OS=Homo sapiens OX=9606 GN=YTHDC1 PE=1 SV=3
E9Q5K9YTH domain-containing protein 1 OS=Mus musculus OX=10090 GN=Ythdc1 PE=1 SV=2
Q9QY02YTH domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Ythdc1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003194 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04146
all species →		YTHYT521-B-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007275
all species →		DomainYTH domainInterproscan
IPR045168
all species →		FamilyYTH domain containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12357
all species →		YTH YT521-B HOMOLOGY DOMAIN-CONTAININGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0000381
all species →		Biological Processregulation of alternative mRNA splicing, via spliceosomeInterproscan
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003729
all species →		Molecular FunctionmRNA bindingInterproscan
GO:0005654
all species →		Cellular ComponentnucleoplasmInterproscan
GO:0048024
all species →		Biological Processregulation of mRNA splicing, via spliceosomeInterproscan
GO:1990247
all species →		Molecular FunctionN6-methyladenosine-containing RNA reader activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap14.1303.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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