Gene detail

Detailed information of evm.model.Ap14.1361 in Astrangia poculata

Genomic Location: Ap14:14637049...14653074
NR annotation: XP_020608030.1, probable ATP-dependent RNA helicase DDX4 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap14.1361

atgtgtgaaagtaaccagagcacagcacttcacaagtttttccgatccacgtgcgaacctttggcaactgggcgaggagaagttgaagacgttgaagctgtcggtcgaagaaaaatgcacgctagctcaccatcgtcatggaccccaagccagagaggagatacagcgaatagcagttactcagggtcgaaaggacaaaacttttcaagacctccacgacgggaagaattcaaggcttacgtaaagaatgttccatcacatatcaccaaggagagtcttgaagcatttttccaaggttgtgggactgtagtatcatgtcatgtcatggagcccaaagaaggaagaaatagcaccattggttttgtgggattttcatctgaagaagaagtcaacaatgcaatacagacaatgaatggtaccacattagaaggtagccagctagctgtagaaagagcgattcaacgagacagaggtactgggacacccatgagaggtcaagaaaatcagtatcaaggtccaaaaacagggtttcaacattctgcgggaggggaagaattcaaggcttatgtgaagaatgttcctgcacatatcaccaaggaaagtcttgaagcatttttccaacgctgtgggactgtagtatcatgtcatgtcatggagcccaaagaaggaagaaatagtactgttggttttgtgggattttcatctgaagaagaggtcaacaatgcaatacagacaatgaacggcacctcattagaaagtaaccagctaacagtagaaagagcgattcaacgagacagaggtactgggacacccatgaggggtcaagaaaatctgtatcagggcccaagaacagattttaaacattctgcgggttttcaaaatggacagccgtcacatcaagggtatagaccaaaacagtatgaacagcctcacaattacacgcagcagccaggtggagtgaaagttgagcaagctatattcaatccaagaggacctggacgcgggattcctatgcagtcacctggtcctaatcctgtaccagggagagacagcaatcacgtgaatggtgtgcctaatgaatattcaaataatactcaaggtccagcaaatccaccttcatggacaaatcaggggccacagcagtgggatcatagtaattctgttgataatcagcacatgcctattagtggacagttcccgcagggtcccatgtcgcaagaaccatacaaccaacaacaacagccacaatttcagaatggtgccttgcctcaagagccgtacaaccaaacagatccacacggccaatttcaaaatggtccagctaatccaccttcatggtcaaatcagcagccacagcaatgggatcaggctaatcagcaattgcctatgagtggacagttccagcagggtcccatgcctcaagaaccatacgaccaacaacaacaacagccacaatttcagaatggtccagaaaatctaccttcatggacaaatcaggggccgcagcaatgggatcagactaattctgttgataaccagcacatgggtatggctggacagttcccgcagggtgccatgccgcaagaaccatacaaccaacaacaacaacagccaccatttcagaatggtccaccttcatggtcgaatcagggccctcagcagtgggatcagagtaattctgttgataatcagcaaatacctataaatggacagttcccgcaggggcccatgccacaagaaccatacaaccaaacagattcacatggacaatttcaaaatggtcccatgccacaagagccatacaaccaacacgaacaacatggacaatttcaaaatggtagttatcagtactttgtgctatcatactactgtgtgacgacagcacataaagataataattgtatatccacccttgatgtattgttgacttacctaggtccagctaatccagcttcatggtcagatcagggaccacagcagtgggatcaaactaattctgtaaataatcagcaaatgagtggacgattaccatacaataccatacctcaagaacaatatacccaacaagaacaaaagccacggtttcagggtggtggtcaaagctgtcataaatgtggtgaagttggtcactttgcacgggaatgccccacccagggtgaacaagggggaagaggttag

Transcript

evm.model.Ap14.1361

ATGTGTGAAAGTAACCAGAGCACAGCACTTCACAAGTTTTTCCGATCCACGTGCGAACCTTTGGCAACTGGGCGAGGAGAAGTTGAAGACGTTGAAGCTGTCGGTCGAAGAAAAATGCACGCTAGCTCACCATCGTCATGGACCCCAAGCCAGAGAGGAGATACAGCGAATAGCAGTTACTCAGGGTCGAAAGGACAAAACTTTTCAAGACCTCCACGACGGGAAGAATTCAAGGCTTACGTAAAGAATGTTCCATCACATATCACCAAGGAGAGTCTTGAAGCATTTTTCCAAGGTTGTGGGACTGTAGTATCATGTCATGTCATGGAGCCCAAAGAAGGAAGAAATAGCACCATTGGTTTTGTGGGATTTTCATCTGAAGAAGAAGTCAACAATGCAATACAGACAATGAATGGTACCACATTAGAAGGTAGCCAGCTAGCTGTAGAAAGAGCGATTCAACGAGACAGAGGTACTGGGACACCCATGAGAGGTCAAGAAAATCAGTATCAAGGTCCAAAAACAGGGTTTCAACATTCTGCGGGAGGGGAAGAATTCAAGGCTTATGTGAAGAATGTTCCTGCACATATCACCAAGGAAAGTCTTGAAGCATTTTTCCAACGCTGTGGGACTGTAGTATCATGTCATGTCATGGAGCCCAAAGAAGGAAGAAATAGTACTGTTGGTTTTGTGGGATTTTCATCTGAAGAAGAGGTCAACAATGCAATACAGACAATGAACGGCACCTCATTAGAAAGTAACCAGCTAACAGTAGAAAGAGCGATTCAACGAGACAGAGGTACTGGGACACCCATGAGGGGTCAAGAAAATCTGTATCAGGGCCCAAGAACAGATTTTAAACATTCTGCGGGTTTTCAAAATGGACAGCCGTCACATCAAGGGTATAGACCAAAACAGTATGAACAGCCTCACAATTACACGCAGCAGCCAGGTGGAGTGAAAGTTGAGCAAGCTATATTCAATCCAAGAGGACCTGGACGCGGGATTCCTATGCAGTCACCTGGTCCTAATCCTGTACCAGGGAGAGACAGCAATCACGTGAATGGTGTGCCTAATGAATATTCAAATAATACTCAAGGTCCAGCAAATCCACCTTCATGGACAAATCAGGGGCCACAGCAGTGGGATCATAGTAATTCTGTTGATAATCAGCACATGCCTATTAGTGGACAGTTCCCGCAGGGTCCCATGTCGCAAGAACCATACAACCAACAACAACAGCCACAATTTCAGAATGGTGCCTTGCCTCAAGAGCCGTACAACCAAACAGATCCACACGGCCAATTTCAAAATGGTCCAGCTAATCCACCTTCATGGTCAAATCAGCAGCCACAGCAATGGGATCAGGCTAATCAGCAATTGCCTATGAGTGGACAGTTCCAGCAGGGTCCCATGCCTCAAGAACCATACGACCAACAACAACAACAGCCACAATTTCAGAATGGTCCAGAAAATCTACCTTCATGGACAAATCAGGGGCCGCAGCAATGGGATCAGACTAATTCTGTTGATAACCAGCACATGGGTATGGCTGGACAGTTCCCGCAGGGTGCCATGCCGCAAGAACCATACAACCAACAACAACAACAGCCACCATTTCAGAATGGTCCACCTTCATGGTCGAATCAGGGCCCTCAGCAGTGGGATCAGAGTAATTCTGTTGATAATCAGCAAATACCTATAAATGGACAGTTCCCGCAGGGGCCCATGCCACAAGAACCATACAACCAAACAGATTCACATGGACAATTTCAAAATGGTCCCATGCCACAAGAGCCATACAACCAACACGAACAACATGGACAATTTCAAAATGGTAGTTATCAGTACTTTGTGCTATCATACTACTGTGTGACGACAGCACATAAAGATAATAATTGTATATCCACCCTTGATGTATTGTTGACTTACCTAGGTCCAGCTAATCCAGCTTCATGGTCAGATCAGGGACCACAGCAGTGGGATCAAACTAATTCTGTAAATAATCAGCAAATGAGTGGACGATTACCATACAATACCATACCTCAAGAACAATATACCCAACAAGAACAAAAGCCACGGTTTCAGGGTGGTGGTCAAAGCTGTCATAAATGTGGTGAAGTTGGTCACTTTGCACGGGAATGCCCCACCCAGGGTGAACAAGGGGGAAGAGGTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08935	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1
P82277	Small ribosomal subunit protein cS22 OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=1 SV=1
P49313	30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000987 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR050502 all species →	Family	Eukaryotic RNA-binding	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025 all species →	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap14.1361.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.