Gene detail

Detailed information of evm.model.Ap14.1389 in Astrangia poculata

Genomic Location: Ap14:14854743...14871476
NR annotation: KAJ7372918.1, DNA-directed RNA polymerase I subunit RPA1 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap14.1389

atgtttggttcaactgccgtaccattccatcatttagacggagtaaaactttctctgtacacgcctgaagagaccaagaaactcagcgtgaaaaagttatcaaatccagaaacattcgacgcgttgttgcacccaaactttgggggtctctatgatccagcgctaggtccaacagacaaagacgacctgtgtggaacatgtgctcagaactatatttactgccctggacattttggtcatttggaacttcctttgcctgtatatcatccattatttttcaaggaattgctgaaaattttacgttcatcttgtttcaagtgcggtgaccttttattttccaggactgttaagcatgtctttgtatgccagatgaaggtgttggattacggtttaattgcagctactgaggaacttcaacagatttctttcacagctctgaatgggagtgagtctgatgataaagctcgggaaattttgtgcattgcagctttagataaacatgttaaaaaggtgttaaatgacatagacaagaaagagaccagacaaaaatcagtggccaaaaatgtcacagactatagacatcgaataatcaaagaatttatgcagacgcacatggctaacaagaggcggtattgccctggttgtaaagcaccatctcgtgatgtgaggagtgaatacaatagccgtgtgtttttgaaggcattgtcagctcgagaggctaataaatgggtaacgacacaggccatccaggcacacttgaaaaaacattcagcttctgtagctaatgacacagaggatactcaccaagacaataatggaattgacacacatgctgagaatggggcatcaagtaccagagacgtaggtgatgttgcaagaacacagactgatgatcagctaaagaaacttatgcaacaaacttttttgactccacttgaggtcaaaaaacaaatttttcaagtctgggaaagatacggtgactttctaaacattctttttggagcttattcatctccaactgcaaaaagaaggtgttgttctgcagatatgttctttatagagatctttccagttcctccttcaaggtttagaccagtgtcgttccttggggacaagcagtttgagaatccacagacagggaacttgaacaagatcatcaaagactgtgtgcttgttaggagctgtcttcaagatttaaacaaacctgcaactgaagaccaaaatacacagacagaaaagaagaagaagggttttggtaagaatgctccagcaacagtgcatggtaaaactgctgcagaaagactccataatgcatggctcaagttacaatctgatgtcaattgctatattgacagtgacttggatagaatatcaactgccaagtttgcaggaatcagacagatacttgagaaaaaagagggattatttagaaaacacatgatgggcaagagagtggactatgcttgcagatctgtcatttcacctgatccatacctgagtgtagatgagattggaatcccagaggtttttgctttgaagttgacttacccacaacctgttactcactggaatgtcaaggaactaagacaggctgtcatcaatggaccccttcagcatcctggggctaccttggtggaacatgaagatggtaaacggactctactcagtaaaactgatcccaatcaaagacaagctattgcaaaacgtctgttaacaccttcaactgacataaaaacacgtgttagtccttgtaaaaaggtctatcggcacctccagaatggcgatgtaatgctgctaaaccgacagccaacattgcacagaccaagtatgatggcccacaaggctcgtgtacttcctggagagaagactattcgccttcactatgctaactgcaagtcttacaatgctgactttgacggtgatgagatgaatgcacattatcctcagaatgaattggcaagggctgaagcctacaacttagcaagcacaaatttccagtacttggttcctaaagatggtacaccactcagtggactgatccaagatcacatggtcgctggagtgaggatgactgtaagaggatgcatgttcaacaggtcagactaccagcagcttgtgttcagtgctctaagcttcaagaacagtaagatcaggctgttgaaaccatgcattatgaaaccttgtgaactttggtcagggaagcaggttgtgtccacagtcttgttgaatctgattccgaatgaagctaagctgctgtgtatgcagggaagagccaaaatagcaggaaaagtgagtcatacagaacatgtctgggaaattgtagtgctatccatttcaaaaccatacaatcagtcatgttttgttatggttgtgatttcttgtgttttaacttga

Transcript

evm.model.Ap14.1389

ATGTTTGGTTCAACTGCCGTACCATTCCATCATTTAGACGGAGTAAAACTTTCTCTGTACACGCCTGAAGAGACCAAGAAACTCAGCGTGAAAAAGTTATCAAATCCAGAAACATTCGACGCGTTGTTGCACCCAAACTTTGGGGGTCTCTATGATCCAGCGCTAGGTCCAACAGACAAAGACGACCTGTGTGGAACATGTGCTCAGAACTATATTTACTGCCCTGGACATTTTGGTCATTTGGAACTTCCTTTGCCTGTATATCATCCATTATTTTTCAAGGAATTGCTGAAAATTTTACGTTCATCTTGTTTCAAGTGCGGTGACCTTTTATTTTCCAGGACTGTTAAGCATGTCTTTGTATGCCAGATGAAGGTGTTGGATTACGGTTTAATTGCAGCTACTGAGGAACTTCAACAGATTTCTTTCACAGCTCTGAATGGGAGTGAGTCTGATGATAAAGCTCGGGAAATTTTGTGCATTGCAGCTTTAGATAAACATGTTAAAAAGGTGTTAAATGACATAGACAAGAAAGAGACCAGACAAAAATCAGTGGCCAAAAATGTCACAGACTATAGACATCGAATAATCAAAGAATTTATGCAGACGCACATGGCTAACAAGAGGCGGTATTGCCCTGGTTGTAAAGCACCATCTCGTGATGTGAGGAGTGAATACAATAGCCGTGTGTTTTTGAAGGCATTGTCAGCTCGAGAGGCTAATAAATGGGTAACGACACAGGCCATCCAGGCACACTTGAAAAAACATTCAGCTTCTGTAGCTAATGACACAGAGGATACTCACCAAGACAATAATGGAATTGACACACATGCTGAGAATGGGGCATCAAGTACCAGAGACGTAGGTGATGTTGCAAGAACACAGACTGATGATCAGCTAAAGAAACTTATGCAACAAACTTTTTTGACTCCACTTGAGGTCAAAAAACAAATTTTTCAAGTCTGGGAAAGATACGGTGACTTTCTAAACATTCTTTTTGGAGCTTATTCATCTCCAACTGCAAAAAGAAGGTGTTGTTCTGCAGATATGTTCTTTATAGAGATCTTTCCAGTTCCTCCTTCAAGGTTTAGACCAGTGTCGTTCCTTGGGGACAAGCAGTTTGAGAATCCACAGACAGGGAACTTGAACAAGATCATCAAAGACTGTGTGCTTGTTAGGAGCTGTCTTCAAGATTTAAACAAACCTGCAACTGAAGACCAAAATACACAGACAGAAAAGAAGAAGAAGGGTTTTGGTAAGAATGCTCCAGCAACAGTGCATGGTAAAACTGCTGCAGAAAGACTCCATAATGCATGGCTCAAGTTACAATCTGATGTCAATTGCTATATTGACAGTGACTTGGATAGAATATCAACTGCCAAGTTTGCAGGAATCAGACAGATACTTGAGAAAAAAGAGGGATTATTTAGAAAACACATGATGGGCAAGAGAGTGGACTATGCTTGCAGATCTGTCATTTCACCTGATCCATACCTGAGTGTAGATGAGATTGGAATCCCAGAGGTTTTTGCTTTGAAGTTGACTTACCCACAACCTGTTACTCACTGGAATGTCAAGGAACTAAGACAGGCTGTCATCAATGGACCCCTTCAGCATCCTGGGGCTACCTTGGTGGAACATGAAGATGGTAAACGGACTCTACTCAGTAAAACTGATCCCAATCAAAGACAAGCTATTGCAAAACGTCTGTTAACACCTTCAACTGACATAAAAACACGTGTTAGTCCTTGTAAAAAGGTCTATCGGCACCTCCAGAATGGCGATGTAATGCTGCTAAACCGACAGCCAACATTGCACAGACCAAGTATGATGGCCCACAAGGCTCGTGTACTTCCTGGAGAGAAGACTATTCGCCTTCACTATGCTAACTGCAAGTCTTACAATGCTGACTTTGACGGTGATGAGATGAATGCACATTATCCTCAGAATGAATTGGCAAGGGCTGAAGCCTACAACTTAGCAAGCACAAATTTCCAGTACTTGGTTCCTAAAGATGGTACACCACTCAGTGGACTGATCCAAGATCACATGGTCGCTGGAGTGAGGATGACTGTAAGAGGATGCATGTTCAACAGGTCAGACTACCAGCAGCTTGTGTTCAGTGCTCTAAGCTTCAAGAACAGTAAGATCAGGCTGTTGAAACCATGCATTATGAAACCTTGTGAACTTTGGTCAGGGAAGCAGGTTGTGTCCACAGTCTTGTTGAATCTGATTCCGAATGAAGCTAAGCTGCTGTGTATGCAGGGAAGAGCCAAAATAGCAGGAAAAGTGAGTCATACAGAACATGTCTGGGAAATTGTAGTGCTATCCATTTCAAAACCATACAATCAGTCATGTTTTGTTATGGTTGTGATTTCTTGTGTTTTAACTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O54889	DNA-directed RNA polymerase I subunit RPA1 OS=Rattus norvegicus OX=10116 GN=Polr1a PE=1 SV=1
O95602	DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens OX=9606 GN=POLR1A PE=1 SV=2
O35134	DNA-directed RNA polymerase I subunit RPA1 OS=Mus musculus OX=10090 GN=Polr1a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002874 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00623 all species →	RNA_pol_Rpb1_2	RNA polymerase Rpb1, domain 2	Domain	Interproscan
PF04997 all species →	RNA_pol_Rpb1_1	RNA polymerase Rpb1, domain 1	Domain	Interproscan
PF04983 all species →	RNA_pol_Rpb1_3	RNA polymerase Rpb1, domain 3	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045867 all species →	Family	DNA-directed RNA polymerase, subunit beta-prime	Interproscan
IPR015699 all species →	Domain	DNA-directed RNA pol I, largest subunit, N-terminal domain	Interproscan
IPR006592 all species →	Domain	RNA polymerase, N-terminal	Interproscan
IPR000722 all species →	Domain	RNA polymerase, alpha subunit	Interproscan
IPR042102 all species →	Homologous_superfamily	RNA polymerase Rpb1, domain 3 superfamily	Interproscan
IPR044893 all species →	Homologous_superfamily	RNA polymerase Rpb1, clamp domain superfamily	Interproscan
IPR007080 all species →	Domain	RNA polymerase Rpb1, domain 1	Interproscan
IPR007066 all species →	Domain	RNA polymerase Rpb1, domain 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19376 all species →	DNA-DIRECTED RNA POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001054 all species →	Molecular Function	RNA polymerase I activity	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0005736 all species →	Cellular Component	RNA polymerase I complex	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap14.1389.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.