Genomic Location: Ap14:15643694...15662703
NR annotation: XP_020627212.1, dystrophin-like isoform X2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap14.1454.1.5f15de56 |
| Transcript |
| evm.model.Ap14.1454.1.5f15de56 |
| Protein |
| evm.model.Ap14.1454.1.5f15de56 |
| UniProt accession | Description |
|---|---|
| G3V7L1 | Utrophin OS=Rattus norvegicus OX=10116 GN=Utrn PE=1 SV=3 |
| P11533 | Dystrophin OS=Gallus gallus OX=9031 GN=DMD PE=2 SV=1 |
| P11530 | Dystrophin OS=Rattus norvegicus OX=10116 GN=Dmd PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000935 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00569 all species → | ZZ | Zinc finger, ZZ type | Domain | Interproscan |
| PF09068 all species → | EF-hand_2 | EF hand | Domain | Interproscan |
| PF09069 all species → | EF-hand_3 | EF-hand | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000433 all species → | Domain | Zinc finger, ZZ-type | Interproscan |
| IPR043145 all species → | Homologous_superfamily | Zinc finger, ZZ-type superfamily | Interproscan |
| IPR050774 all species → | Family | KCMF1 and Dystrophin | Interproscan |
| IPR015153 all species → | Domain | EF-hand domain, type 1 | Interproscan |
| IPR011992 all species → | Homologous_superfamily | EF-hand domain pair | Interproscan |
| IPR015154 all species → | Domain | EF-hand domain, type 2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12268 all species → | E3 UBIQUITIN-PROTEIN LIGASE KCMF1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0099536 all species → | Biological Process | synaptic signaling | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12182 | HGS, HRS, VPS27; hepatocyte growth factor-regulated tyrosine kinase substrate | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of evm.model.Ap14.1454.1.5f15de56 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
