Gene detail

Detailed information of evm.model.Ap14.1454.2.5f15de57 in Astrangia poculata

Genomic Location: Ap14:15641502...15662703
NR annotation: XP_020627211.1, dystrophin-like isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap14.1454.2.5f15de57

atgcctgggattacagttacaggtaaattacctgatggctgggaacgttccgaaaccaccaacggcatcccttattacatcaaccatgaaacagaaagaactcagtgggaccatccagagatggtcagtttgatggaggaaattgagagtttgagtaacatcaagtatgcagcataccgcacagccatgaaactgagagctattcagaagaaaacacaattatatatggttgatctacgagttattaaagcatcccttacaaaggaaggaataaaagatggttatgtcgagggaactttgtcagtatctgaattgacaagaattattactgctatctttattaatcaaactggtgaccaagatggctcaatagatgtgtctcttgcaagtgaactggtgcttaattggatactcaatgtctatgatccgggaagaatgggttttgtgccaattctgtcactaaaggtcgctctctctgtgatgtgttctgagaaggttcaagaaaaatacagatatttgtttttacagctttgtaataaccaagggtttttggacagacaaaggcttaaattgttcctgcaggagatgctacagattccaaagtatatctatgagagcacagctttcagtggatccagtgtggagccagctgttagaaactgctttgaaagggtatccattccagaaagggtatctgccgaggagtttattgaatggatgattgcagagccacaaactattgtgtggcttcctacacttcatagattagctgtttcagaaacagtgaaacacgaatcaaaatgcaatgtgtgtaagatgtatcctatagtcggcttcagatatcgctgtctaaaatgcttcaactttgatctatgtcagggatgtttttggtctggccgtgtaaataaacagcacaaaatagggcaccctactcaggagtactgccttgtgtcgacacaaaaagaagatatcaaagacttcgccaaagtaatgcgtaacaaagtgagcaagaaaaagaagaaggcgccagtacatccatccaaaggaaggtttattccgcttgaaatggaagatgctgcaccttctgacgaagaagacgaggattacgtagacgcttcttctccagtgaaggtatttccaggaacacacgacaaacttggaagttatgcagcaagacttgcaaaccacgagacaaaggacgatgaagaagttacaaaggaacagcccgttatggcaagacctgtaatggatgatgaacaccatcttatacgacattatacaaaaagcttgactggtgaaccatctggggagttaacgtctcccagtacctctcaagttgcgagagacatggacagccaagaaaagcgagatctggaagatctgatcacaactctagagaatgacaacagagctttacagggcgagatcaacaacattcatcacttacaacgccaaaatcaaaaggaacatagtgttatccctgtcgaggacccagctagagaggcctatttacgtcagcagagggaacgtctggaggcgcgcgaggaggtcctcgaggagcataattaccagctacaagttcagctccatcgattaaggatccttctacagcaggaagaaagtacgctttctggtcttattaaagaagaagagaaaatggcagcaaagtttgctcgtgagcgcatgggacagatttgtttagacgcaaactacaaaccactgacgggtgatgtttcgcaactgtctcctctaatgaagtcagcggttcagccatcatctaagccctacaccactcagacccccacagaaaccactgctatggcccccctgacgagctcccggccaaacactggcatcggtgcatcggcaggcaacggttctggtggcgtgtacccatcctcgtcgataccaggagtatcaccgatgtaccctacccctcgcccctcgtctgtcccccaaacaagcttcctgaccccaggaccatcgatgcaagcctaccccccacagtactcattaccgcctggcatgtcccctccttggagagatgcctatcaacagtcacaaactggtgctgtccggggggcctccccgagtagtccttttgcccctaagacagcagcagagttaggtctgttagaccgaccagagacttcgtatgaagggatggaattgagtaatatagtagacagaatgacttcagctttccctatggacgtccactcagacatgcctgttgacgtacacaatgatctttttctctctgcaagtcttattggcgaagccatgcagtccatggtgactacagtatcacggaaaactggtacaaggaaaggcgcactggaatcaggaagaacattcaaccgagactccggggatcccagtaactatggtcgagacgatcctaatgtaagcaaaagattctcgagtcacagtgctgacgggtttgagtacgggccgctatga

Transcript

evm.model.Ap14.1454.2.5f15de57

ACAAACTTAGAGCCCTCTCCACCGCTTTTTCTTCGTGGCTTGGAAAGAAGAAACATAATGCCTGGGATTACAGTTACAGGTAAATTACCTGATGGCTGGGAACGTTCCGAAACCACCAACGGCATCCCTTATTACATCAACCATGAAACAGAAAGAACTCAGTGGGACCATCCAGAGATGGTCAGTTTGATGGAGGAAATTGAGAGTTTGAGTAACATCAAGTATGCAGCATACCGCACAGCCATGAAACTGAGAGCTATTCAGAAGAAAACACAATTATATATGGTTGATCTACGAGTTATTAAAGCATCCCTTACAAAGGAAGGAATAAAAGATGGTTATGTCGAGGGAACTTTGTCAGTATCTGAATTGACAAGAATTATTACTGCTATCTTTATTAATCAAACTGGTGACCAAGATGGCTCAATAGATGTGTCTCTTGCAAGTGAACTGGTGCTTAATTGGATACTCAATGTCTATGATCCGGGAAGAATGGGTTTTGTGCCAATTCTGTCACTAAAGGTCGCTCTCTCTGTGATGTGTTCTGAGAAGGTTCAAGAAAAATACAGATATTTGTTTTTACAGCTTTGTAATAACCAAGGGTTTTTGGACAGACAAAGGCTTAAATTGTTCCTGCAGGAGATGCTACAGATTCCAAAGTATATCTATGAGAGCACAGCTTTCAGTGGATCCAGTGTGGAGCCAGCTGTTAGAAACTGCTTTGAAAGGGTATCCATTCCAGAAAGGGTATCTGCCGAGGAGTTTATTGAATGGATGATTGCAGAGCCACAAACTATTGTGTGGCTTCCTACACTTCATAGATTAGCTGTTTCAGAAACAGTGAAACACGAATCAAAATGCAATGTGTGTAAGATGTATCCTATAGTCGGCTTCAGATATCGCTGTCTAAAATGCTTCAACTTTGATCTATGTCAGGGATGTTTTTGGTCTGGCCGTGTAAATAAACAGCACAAAATAGGGCACCCTACTCAGGAGTACTGCCTTGTGTCGACACAAAAAGAAGATATCAAAGACTTCGCCAAAGTAATGCGTAACAAAGTGAGCAAGAAAAAGAAGAAGGCGCCAGTACATCCATCCAAAGGAAGGTTTATTCCGCTTGAAATGGAAGATGCTGCACCTTCTGACGAAGAAGACGAGGATTACGTAGACGCTTCTTCTCCAGTGAAGGTATTTCCAGGAACACACGACAAACTTGGAAGTTATGCAGCAAGACTTGCAAACCACGAGACAAAGGACGATGAAGAAGTTACAAAGGAACAGCCCGTTATGGCAAGACCTGTAATGGATGATGAACACCATCTTATACGACATTATACAAAAAGCTTGACTGGTGAACCATCTGGGGAGTTAACGTCTCCCAGTACCTCTCAAGTTGCGAGAGACATGGACAGCCAAGAAAAGCGAGATCTGGAAGATCTGATCACAACTCTAGAGAATGACAACAGAGCTTTACAGGGCGAGATCAACAACATTCATCACTTACAACGCCAAAATCAAAAGGAACATAGTGTTATCCCTGTCGAGGACCCAGCTAGAGAGGCCTATTTACGTCAGCAGAGGGAACGTCTGGAGGCGCGCGAGGAGGTCCTCGAGGAGCATAATTACCAGCTACAAGTTCAGCTCCATCGATTAAGGATCCTTCTACAGCAGGAAGAAAGTACGCTTTCTGGTCTTATTAAAGAAGAAGAGAAAATGGCAGCAAAGTTTGCTCGTGAGCGCATGGGACAGATTTGTTTAGACGCAAACTACAAACCACTGACGGGTGATGTTTCGCAACTGTCTCCTCTAATGAAGTCAGCGGTTCAGCCATCATCTAAGCCCTACACCACTCAGACCCCCACAGAAACCACTGCTATGGCCCCCCTGACGAGCTCCCGGCCAAACACTGGCATCGGTGCATCGGCAGGCAACGGTTCTGGTGGCGTGTACCCATCCTCGTCGATACCAGGAGTATCACCGATGTACCCTACCCCTCGCCCCTCGTCTGTCCCCCAAACAAGCTTCCTGACCCCAGGACCATCGATGCAAGCCTACCCCCCACAGTACTCATTACCGCCTGGCATGTCCCCTCCTTGGAGAGATGCCTATCAACAGTCACAAACTGGTGCTGTCCGGGGGGCCTCCCCGAGTAGTCCTTTTGCCCCTAAGACAGCAGCAGAGTTAGGTCTGTTAGACCGACCAGAGACTTCGTATGAAGGGATGGAATTGAGTAATATAGTAGACAGAATGACTTCAGCTTTCCCTATGGACGTCCACTCAGACATGCCTGTTGACGTACACAATGATCTTTTTCTCTCTGCAAGTCTTATTGGCGAAGCCATGCAGTCCATGGTGACTACAGTATCACGGAAAACTGGTACAAGGAAAGGCGCACTGGAATCAGGAAGAACATTCAACCGAGACTCCGGGGATCCCAGTAACTATGGTCGAGACGATCCTAATGTAAGCAAAAGATTCTCGAGTCACAGTGCTGACGGGTTTGAGTACGGGCCGCTATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P11533	Dystrophin OS=Gallus gallus OX=9031 GN=DMD PE=2 SV=1
P11530	Dystrophin OS=Rattus norvegicus OX=10116 GN=Dmd PE=1 SV=2
P11531	Dystrophin OS=Mus musculus OX=10090 GN=Dmd PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003291 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00397 all species →	WW	WW domain	Domain	Interproscan
PF00569 all species →	ZZ	Zinc finger, ZZ type	Domain	Interproscan
PF09069 all species →	EF-hand_3	EF-hand	Domain	Interproscan
PF09068 all species →	EF-hand_2	EF hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001202 all species →	Domain	WW domain	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan
IPR015154 all species →	Domain	EF-hand domain, type 2	Interproscan
IPR050774 all species →	Family	KCMF1 and Dystrophin	Interproscan
IPR015153 all species →	Domain	EF-hand domain, type 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12268 all species →	E3 UBIQUITIN-PROTEIN LIGASE KCMF1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0099536 all species →	Biological Process	synaptic signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap14.1454.2.5f15de57.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.