Gene detail

Detailed information of evm.model.Ap14.1462 in Astrangia poculata

Genomic Location: Ap14:15720591...15727472
NR annotation: PFX16501.1, Transposon TX1 uncharacterized 149 kDa protein [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap14.1462

atgcgtcaatcatatgacccgtttaatcttgccgttataaaaatgtttactgcgagagcaaagatcagttggttgatcagtgacagagtgaactacaactgctgtatttctcgttgggttgaggagggcgagtcttcctcttcctatttcttccggcttgtgaagaaaaggaaggctgagagtatcatctcttctcttaaattatctctgtctccggatgatgctgatttgtgtgagggtgatttgtcagttcctgagtgtcttgaggctctcaagggcatggccaagaataaaacacctggtcttgatggcctacctgctgctattataaaattggttctagagccattgctggtcgtttattgcgtgtacgtcattgacaaagttgtctcgcctgaccagactgctggggttcctgggaggtttatcggcgagaatgtttctctcgtccgtgatgctgttttctatgcttgtcaaaatgatctccccctggctgttctcaccttggatcaagagaaggccttcgatcgtgttgagtggcccttcttgtttctgactttagaacgaatgggttttggcccatcgttttgtaaatgggtccaaactttgtacaccggtgttcaaagatctgttattgtcaatggtcatctgtctgagttttttaacttgcatagaggggttcgccaggggtgtccgctttctcccctcctctatgttttagttgcggaaaccctctcgactactctcaaagcctgtcctcgtatccgcgggttgactctgccgtctcctttggcttctcctagttttttgtcccagtatgcggatgacgcgtccattcttgtcaccactgatgactctattctggccgtgtttgaggtttttgaccagtatgagcaagggtcaggggcccgtttgaatcgttccaagtgtaaaggtctgtgggccggtgcttggcgtggtcgtgtgcctgggccggttgatattcgttggtcgtctgtcaaaatccgttgtttgggcacctttcagggtccgggtgatctgtcgcatgacaactgggatccccggatccaggccctgaaaaacctcctttcgagttggcgtcagcgttcgcttacctttcagggtaagtctttagttattaatgctttagctctgtcaggcctctggtatcttggttccgtcatggctcctcctccttgggtcatttctgcggttaatacggagatctttaatttcttttggtctggtaagaaggataaggtggcgcgtaagattgtttgccaacctaagtctgtgggaggttttaatgttgtcgatgtttcctctaagtttcgtgctcttcatgtcaactgggtccgtcgtttctctcaatcttcaacgagctggactttgtttttccacttcttttgcttggcttttttgggtgatggaccatctgatgtcctctctgaccctgcatactacccccatgacctcctgcctcccttttactcctcgatggtctatgtctggggtttattgggtggcggtggtgttttcccgagtctaacttttaataaatctggtgttgtctcttctgtggattgtctctctgttaagctggcttattcgttgctgttgaagaatgctgctgatatcccccattgtgttagtaagttacgtcccgtgtttggtgatttgtattggtccactacttggagccaagttcacattctcccttttgatcgtcctgtgaatgattttgcttggttgttagctcatggtgttgtgttcactgctgatcgtctccgtttgtcctttggtatgacctctgtcccgcctgactgcttttgtggtgctcccttggagacagcgtcccatctgttttttgagtgccctctggctcagagtgttcttggttgggtgcaaagtctcttggttcgggctgttccatctgccccctcgctttgtcttcgccatatcttttttggctttgacatggctgagtttacgattattccgagagtctttgtctaccttatcaacttgtctaaacatcgaatctggcttgctcgtaatgatttccgtttcagaaatcaaatgccctctgctctggatgttatctattcggttcgttctcagtcttccagtttcaagtcaccttttgaagccgttcttgcactcgctatggcaaagcaatacccaggttctgtgtccgttgatgacgtcaagcatgaatgccctgtgttcgccgacaaggtttgtccattttccaaactgccagaggaaaagaaaggcgtggctgccaagtgccctgcctttaagactggttgtccttttaaagggtgcaaatctgttggagagtttcaagacaagcttggtcagatgcgcgaccagtgcaagggtgatcctgcctacgttcagtttctccgggacactgtaagggttgccaaagaaaaagatgtcgacattggatcatcttgcccttttttccagattaagggtggctgcccgtttgccaatgacaccagtggaaagcctattctatcaccagactatatcgtgacccccatgggcgtcaccttgaatgatgtaatgttcaagtgcccagcttttggcaaaggagtgtgcccgtacgccatccttgttaaggaatgcaaaggtctggctggaaactgtcctgcttttaaggggggctgcccgttcaagaactgcaagaccgttggcgagttcgtcgagaagttgactcagatgcgagatggaattaaggatagcgcaaagggaaaggctgccctggccaagtttatgcaagagctacaggccgtcaatgagagcgagcagacgaagctgggcgcttgccctttcaacgcgcatgtctgcccattcagccatgatgccgaaggcaaggcaattattcccaagtga

Transcript

evm.model.Ap14.1462

ATGCGTCAATCATATGACCCGTTTAATCTTGCCGTTATAAAAATGTTTACTGCGAGAGCAAAGATCAGTTGGTTGATCAGTGACAGAGTGAACTACAACTGCTGTATTTCTCGTTGGGTTGAGGAGGGCGAGTCTTCCTCTTCCTATTTCTTCCGGCTTGTGAAGAAAAGGAAGGCTGAGAGTATCATCTCTTCTCTTAAATTATCTCTGTCTCCGGATGATGCTGATTTGTGTGAGGGTGATTTGTCAGTTCCTGAGTGTCTTGAGGCTCTCAAGGGCATGGCCAAGAATAAAACACCTGGTCTTGATGGCCTACCTGCTGCTATTATAAAATTGGTTCTAGAGCCATTGCTGGTCGTTTATTGCGTGTACGTCATTGACAAAGTTGTCTCGCCTGACCAGACTGCTGGGGTTCCTGGGAGGTTTATCGGCGAGAATGTTTCTCTCGTCCGTGATGCTGTTTTCTATGCTTGTCAAAATGATCTCCCCCTGGCTGTTCTCACCTTGGATCAAGAGAAGGCCTTCGATCGTGTTGAGTGGCCCTTCTTGTTTCTGACTTTAGAACGAATGGGTTTTGGCCCATCGTTTTGTAAATGGGTCCAAACTTTGTACACCGGTGTTCAAAGATCTGTTATTGTCAATGGTCATCTGTCTGAGTTTTTTAACTTGCATAGAGGGGTTCGCCAGGGGTGTCCGCTTTCTCCCCTCCTCTATGTTTTAGTTGCGGAAACCCTCTCGACTACTCTCAAAGCCTGTCCTCGTATCCGCGGGTTGACTCTGCCGTCTCCTTTGGCTTCTCCTAGTTTTTTGTCCCAGTATGCGGATGACGCGTCCATTCTTGTCACCACTGATGACTCTATTCTGGCCGTGTTTGAGGTTTTTGACCAGTATGAGCAAGGGTCAGGGGCCCGTTTGAATCGTTCCAAGTGTAAAGGTCTGTGGGCCGGTGCTTGGCGTGGTCGTGTGCCTGGGCCGGTTGATATTCGTTGGTCGTCTGTCAAAATCCGTTGTTTGGGCACCTTTCAGGGTCCGGGTGATCTGTCGCATGACAACTGGGATCCCCGGATCCAGGCCCTGAAAAACCTCCTTTCGAGTTGGCGTCAGCGTTCGCTTACCTTTCAGGGTAAGTCTTTAGTTATTAATGCTTTAGCTCTGTCAGGCCTCTGGTATCTTGGTTCCGTCATGGCTCCTCCTCCTTGGGTCATTTCTGCGGTTAATACGGAGATCTTTAATTTCTTTTGGTCTGGTAAGAAGGATAAGGTGGCGCGTAAGATTGTTTGCCAACCTAAGTCTGTGGGAGGTTTTAATGTTGTCGATGTTTCCTCTAAGTTTCGTGCTCTTCATGTCAACTGGGTCCGTCGTTTCTCTCAATCTTCAACGAGCTGGACTTTGTTTTTCCACTTCTTTTGCTTGGCTTTTTTGGGTGATGGACCATCTGATGTCCTCTCTGACCCTGCATACTACCCCCATGACCTCCTGCCTCCCTTTTACTCCTCGATGGTCTATGTCTGGGGTTTATTGGGTGGCGGTGGTGTTTTCCCGAGTCTAACTTTTAATAAATCTGGTGTTGTCTCTTCTGTGGATTGTCTCTCTGTTAAGCTGGCTTATTCGTTGCTGTTGAAGAATGCTGCTGATATCCCCCATTGTGTTAGTAAGTTACGTCCCGTGTTTGGTGATTTGTATTGGTCCACTACTTGGAGCCAAGTTCACATTCTCCCTTTTGATCGTCCTGTGAATGATTTTGCTTGGTTGTTAGCTCATGGTGTTGTGTTCACTGCTGATCGTCTCCGTTTGTCCTTTGGTATGACCTCTGTCCCGCCTGACTGCTTTTGTGGTGCTCCCTTGGAGACAGCGTCCCATCTGTTTTTTGAGTGCCCTCTGGCTCAGAGTGTTCTTGGTTGGGTGCAAAGTCTCTTGGTTCGGGCTGTTCCATCTGCCCCCTCGCTTTGTCTTCGCCATATCTTTTTTGGCTTTGACATGGCTGAGTTTACGATTATTCCGAGAGTCTTTGTCTACCTTATCAACTTGTCTAAACATCGAATCTGGCTTGCTCGTAATGATTTCCGTTTCAGAAATCAAATGCCCTCTGCTCTGGATGTTATCTATTCGGTTCGTTCTCAGTCTTCCAGTTTCAAGTCACCTTTTGAAGCCGTTCTTGCACTCGCTATGGCAAAGCAATACCCAGGTTCTGTGTCCGTTGATGACGTCAAGCATGAATGCCCTGTGTTCGCCGACAAGGTTTGTCCATTTTCCAAACTGCCAGAGGAAAAGAAAGGCGTGGCTGCCAAGTGCCCTGCCTTTAAGACTGGTTGTCCTTTTAAAGGGTGCAAATCTGTTGGAGAGTTTCAAGACAAGCTTGGTCAGATGCGCGACCAGTGCAAGGGTGATCCTGCCTACGTTCAGTTTCTCCGGGACACTGTAAGGGTTGCCAAAGAAAAAGATGTCGACATTGGATCATCTTGCCCTTTTTTCCAGATTAAGGGTGGCTGCCCGTTTGCCAATGACACCAGTGGAAAGCCTATTCTATCACCAGACTATATCGTGACCCCCATGGGCGTCACCTTGAATGATGTAATGTTCAAGTGCCCAGCTTTTGGCAAAGGAGTGTGCCCGTACGCCATCCTTGTTAAGGAATGCAAAGGTCTGGCTGGAAACTGTCCTGCTTTTAAGGGGGGCTGCCCGTTCAAGAACTGCAAGACCGTTGGCGAGTTCGTCGAGAAGTTGACTCAGATGCGAGATGGAATTAAGGATAGCGCAAAGGGAAAGGCTGCCCTGGCCAAGTTTATGCAAGAGCTACAGGCCGTCAATGAGAGCGAGCAGACGAAGCTGGGCGCTTGCCCTTTCAACGCGCATGTCTGCCCATTCAGCCATGATGCCGAAGGCAAGGCAATTATTCCCAAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P14381	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1
O00370	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1
P11369	LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002366 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13966 all species →	zf-RVT	zinc-binding in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR052343 all species →	Family	Diverse Retrotransposon and Effector-Associated Protein	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR026960 all species →	Domain	Reverse transcriptase zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46890 all species →	NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for evm.model.Ap14.1462. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap14.1462.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.