Gene detail

Detailed information of evm.model.Ap14.1533 in Astrangia poculata

Genomic Location: Ap14:16508232...16547271
NR annotation: KAJ7377217.1, DNA repair endonuclease XPF [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap14.1533

atgaaatcactatggctactcgctggcgcgttgctgctacgacacctggtaactagtgcccagggccttgagaactcttcttattgtgatgttgacgctcgctgtcactgtttgttacacccaaatgcattctgggatactagatgccaactaaatggttctacccaaccaacaacgcctttggttctatttaaatccttggatttgtccaggaacggcctacaaaacatacccacggagtttttgctgaatcagagtcagttggtcaaccttactctggcttacaaccgtatctccactataacagacggtgcctttggtaaacttcataacgtcaaattattggacctgagctttaatccattgcaaacgtggaaaggtgacgtcattacgcaactcccaaacctcgagaccttaatcgtgaccggaagtttatggaccccagatagcaacatcttaaacgtgccatctcttggacgcatcatgggtgttacatggagtgacaaatgcgccaactgtacattgttcagagcaaatatatccaattcgttcgcactcaacttggaacacggcacggacaatcctgtaggaaaatttgtggaacatggatttgttccagtttgcgccggcaatttaaggtgttctccaacaattcgtatcccatcttccaaagacgatgctgaaaaaatgaaagtgataaatgttcctaagaaacttttctatacgtcctacttgatgggtgcagtggccattttactaaatctgatcgttttaattacaattctttcctcgagatctcttcgcaaaacaacatcgatgctactaatcgcaaacatggccgtttgtgatctctttattggtatatactctatcgtaattggcagtttgaacatctttaactttttgtccaacttgagtgacaatctggacacaggcgagaagcttgttcttggaggaggaatcttgtgtccgttagcttctgccatatttacatcagctgagtgtgttgcggcagttacttcccttctactcaccgtagagaaatattgctcgatcgtacattgcatgaaccctgaccatcgattaagcaagaaagtcgccgcagtatgcttgcttttttgctggattgtatcactctgttacgcgctctcccctatgttccacgttctaaatctctctttcagtgcaacaatgatgtgcagttttccagtcgcacagaagaacacattcttaatctgcttaggagttctcatcgcactatacatcgcgaacatccctttatacgcgcgaatatttcttttcgtccgtcgctcaggcgctaatttaggcgtcaagcgtgaggcggctattctcaagaagatcgctctagttgttggcagcaattttcttcttctattggcaccaatgatactaatcataacatttgtacccgttgaaagtatccacgataccattgaagtgaacagtgatcgcaaaactcagattttattcgtgataggattctggtttcctatcgcatgccttggtctaaactcctgcataaatccaattctctgtgccttcaggcaagggaagttcgtgaaacggatcaagaaagtgttcaaactacacaggatccccccgtttgttagcgctttcaagagaaatacagcaactgggtctatatcgcagatgaacacagcttcatctcagattgttctttacaaagtgactcacttcgacaagggattgagcatagagaaggttgtgacaagctttctcaagatccactgtgtgacaagtgacccttcgtctatctctttagtccttgtaatcaacacaacagatcaagaagaacgaattctgctttcgatgtcagcgagatatttccgtgaatgttttggaaacgctctgttttataccattatgaatttggaacttttggactatatacttgatgaactgaaatcttcagatgttccattaccaaaggttatcaccactgaattcagttcaactgagagggagtctgtgtaccttagtggaggtgtactgtttgtcacgtctagaatcttggtcgttgacatgctgaccaagaagctgcccattcatctggtgacaggaattgttgtctatcgagctcataaaatcattgaatcttgccaagaggctttcatactgcgactatatagagagaataacaagaatggttttatcaaagccttttcagatagtcctcaggcttttactactggtttctttcaagtggagaaagtgatgaagaacctgtttgttagaaaactctatctctggccaagatttcatgcaacagtttcagcttttctggaaaagcacaagccagaggtcattgagcttcatctccaccttacaccctccatgctcgccatccaaacagccgttcttgacttgattgacacctgtcttaaagaactgaaaagagcaaacccaacacttgatgctgatgaccttactgtggagaacagcatcagcaagtcgtttgacaagattctgagatttcagcttaatcctgtctggcatcaactgggaaataagacaaagcaattggttgctgatcttaaagtgttaaggctgattctactttacctcacacaatatgactgtgtcacattctacaactttctggaatcattaagggcaagtcagcgtgatgtgaagaatcatgccctttggatgtttatggatgctgcagattctctgtttgtgcatgcaaaatccagagttgtggagtacacggagaggaagagcaagaaaatgaaaggagagacatcaagcaagaaagatgactcaaaacacagttccactgacgagaaagatcggaaagaggatcttgttctagaagagagtccgaagtggaagctacttgcagatgtcttggatgagatagagcgcgacgatgccaaaaatgacagcaaacactttggtaagttggcctggtatgtactgatagctgcctatgatgaaagaacttgctcacagcttagagattatctctgtgatggcggtgaagcttttgctcaaacgtctttacaacaagttgctgaagaatccaacacgggggtgaaactacagacagctacttttagtgacgaaactgtgcgtggcgatgctgctgcagctaacgctaaaaaagtggatttaccatcatctcgtcaacgtaaaggcaaagctaaggctggggaaaaggggaaagggaaaggaaaagctacagcatcaaagaagactggcaaagatgacgcaaggatggtgccagtacatcgacaacgcagctatttaaaggtatttttcactactgaaagaaatgtcacttacgtgtttaacaaagaatcacttttattagcaccagttgaaaggaacttggttcttgtggcaactggctcaaggtcaaatgttatcttaaggccaggcgatgaagcaaacaagcaaacggaagaggattcacctccaataaaattgttgtcatcacgcgtgataatcatacatcctctgacgggatgcagtgatcgctacagtttactgaggactctatgtgaagttgaaccacgttacgttgtgctgtatgatgcacaaatgcagtttatacgtcagctagaggtttacaaggcttcaagacctggaattcctcttcgtgtgtatttcttaatttacacaggttctgtggaggaacagaaatacttaacaactcttcgcaaagaaaaagaggcatttgaggtgctcataaaaaataaaggaaccatggttgtacccgaagaacgtgaaggaaagacagatgcatctatgatgctcagtagagatccatccaaagcaactgatgctgtgagcacaaggaaagcaggagcactggacggaaaaaacaaggcgcctagaaaggtcattgttgacatgcgagagtttcgcagtgaacttccttcgctgatacatcggagaggaattgatgtagaacctgtcacgttagaggtcggagactacattctcaccccagacatgtgtgttgaacgaaagagcataagtgatctgattggctccctaaacaacggaaggctgtacaaccaggcggttgcaatgaccagattttacaaaagacccattctgttaattgaatttgaccctaacaagtcattttcattgcaggcaaaatctagtttgtcaagtgaagtctccttcaatgacatctcttctaagttgtctttacttacacttcattttccaaagttaagaatcttatggtgtcacagtccttatgcaactgctgagttatttgacgatttgaaggcgaatcaccctgaaccagatgctaacacagccatggctgtaggatctgaccccacagcagctgcgtctgatatcacatacaacataggaccacaggactttattttgaagcttcccggaataaatttcaagaattacagatctataatgaaaaacgtcgaaagtattcaagaactttttgcgttgtcacaagaaagactcgctactattttaggcaatgctgccagcgcaaagcaactctgggagtttattcacaccgacaacaagcctcgtgcgaaagcacaaacttcgtcaaaaggcaaaagatag

Transcript

evm.model.Ap14.1533

ATGAAATCACTATGGCTACTCGCTGGCGCGTTGCTGCTACGACACCTGGTAACTAGTGCCCAGGGCCTTGAGAACTCTTCTTATTGTGATGTTGACGCTCGCTGTCACTGTTTGTTACACCCAAATGCATTCTGGGATACTAGATGCCAACTAAATGGTTCTACCCAACCAACAACGCCTTTGGTTCTATTTAAATCCTTGGATTTGTCCAGGAACGGCCTACAAAACATACCCACGGAGTTTTTGCTGAATCAGAGTCAGTTGGTCAACCTTACTCTGGCTTACAACCGTATCTCCACTATAACAGACGGTGCCTTTGGTAAACTTCATAACGTCAAATTATTGGACCTGAGCTTTAATCCATTGCAAACGTGGAAAGGTGACGTCATTACGCAACTCCCAAACCTCGAGACCTTAATCGTGACCGGAAGTTTATGGACCCCAGATAGCAACATCTTAAACGTGCCATCTCTTGGACGCATCATGGGTGTTACATGGAGTGACAAATGCGCCAACTGTACATTGTTCAGAGCAAATATATCCAATTCGTTCGCACTCAACTTGGAACACGGCACGGACAATCCTGTAGGAAAATTTGTGGAACATGGATTTGTTCCAGTTTGCGCCGGCAATTTAAGGTGTTCTCCAACAATTCGTATCCCATCTTCCAAAGACGATGCTGAAAAAATGAAAGTGATAAATGTTCCTAAGAAACTTTTCTATACGTCCTACTTGATGGGTGCAGTGGCCATTTTACTAAATCTGATCGTTTTAATTACAATTCTTTCCTCGAGATCTCTTCGCAAAACAACATCGATGCTACTAATCGCAAACATGGCCGTTTGTGATCTCTTTATTGGTATATACTCTATCGTAATTGGCAGTTTGAACATCTTTAACTTTTTGTCCAACTTGAGTGACAATCTGGACACAGGCGAGAAGCTTGTTCTTGGAGGAGGAATCTTGTGTCCGTTAGCTTCTGCCATATTTACATCAGCTGAGTGTGTTGCGGCAGTTACTTCCCTTCTACTCACCGTAGAGAAATATTGCTCGATCGTACATTGCATGAACCCTGACCATCGATTAAGCAAGAAAGTCGCCGCAGTATGCTTGCTTTTTTGCTGGATTGTATCACTCTGTTACGCGCTCTCCCCTATGTTCCACGTTCTAAATCTCTCTTTCAGTGCAACAATGATGTGCAGTTTTCCAGTCGCACAGAAGAACACATTCTTAATCTGCTTAGGAGTTCTCATCGCACTATACATCGCGAACATCCCTTTATACGCGCGAATATTTCTTTTCGTCCGTCGCTCAGGCGCTAATTTAGGCGTCAAGCGTGAGGCGGCTATTCTCAAGAAGATCGCTCTAGTTGTTGGCAGCAATTTTCTTCTTCTATTGGCACCAATGATACTAATCATAACATTTGTACCCGTTGAAAGTATCCACGATACCATTGAAGTGAACAGTGATCGCAAAACTCAGATTTTATTCGTGATAGGATTCTGGTTTCCTATCGCATGCCTTGGTCTAAACTCCTGCATAAATCCAATTCTCTGTGCCTTCAGGCAAGGGAAGTTCGTGAAACGGATCAAGAAAGTGTTCAAACTACACAGGATCCCCCCGTTTGTTAGCGCTTTCAAGAGAAATACAGCAACTGGGTCTATATCGCAGATGAACACAGCTTCATCTCAGATTGTTCTTTACAAAGTGACTCACTTCGACAAGGGATTGAGCATAGAGAAGGTTGTGACAAGCTTTCTCAAGATCCACTGTGTGACAAGTGACCCTTCGTCTATCTCTTTAGTCCTTGTAATCAACACAACAGATCAAGAAGAACGAATTCTGCTTTCGATGTCAGCGAGATATTTCCGTGAATGTTTTGGAAACGCTCTGTTTTATACCATTATGAATTTGGAACTTTTGGACTATATACTTGATGAACTGAAATCTTCAGATGTTCCATTACCAAAGGTTATCACCACTGAATTCAGTTCAACTGAGAGGGAGTCTGTGTACCTTAGTGGAGGTGTACTGTTTGTCACGTCTAGAATCTTGGTCGTTGACATGCTGACCAAGAAGCTGCCCATTCATCTGGTGACAGGAATTGTTGTCTATCGAGCTCATAAAATCATTGAATCTTGCCAAGAGGCTTTCATACTGCGACTATATAGAGAGAATAACAAGAATGGTTTTATCAAAGCCTTTTCAGATAGTCCTCAGGCTTTTACTACTGGTTTCTTTCAAGTGGAGAAAGTGATGAAGAACCTGTTTGTTAGAAAACTCTATCTCTGGCCAAGATTTCATGCAACAGTTTCAGCTTTTCTGGAAAAGCACAAGCCAGAGGTCATTGAGCTTCATCTCCACCTTACACCCTCCATGCTCGCCATCCAAACAGCCGTTCTTGACTTGATTGACACCTGTCTTAAAGAACTGAAAAGAGCAAACCCAACACTTGATGCTGATGACCTTACTGTGGAGAACAGCATCAGCAAGTCGTTTGACAAGATTCTGAGATTTCAGCTTAATCCTGTCTGGCATCAACTGGGAAATAAGACAAAGCAATTGGTTGCTGATCTTAAAGTGTTAAGGCTGATTCTACTTTACCTCACACAATATGACTGTGTCACATTCTACAACTTTCTGGAATCATTAAGGGCAAGTCAGCGTGATGTGAAGAATCATGCCCTTTGGATGTTTATGGATGCTGCAGATTCTCTGTTTGTGCATGCAAAATCCAGAGTTGTGGAGTACACGGAGAGGAAGAGCAAGAAAATGAAAGGAGAGACATCAAGCAAGAAAGATGACTCAAAACACAGTTCCACTGACGAGAAAGATCGGAAAGAGGATCTTGTTCTAGAAGAGAGTCCGAAGTGGAAGCTACTTGCAGATGTCTTGGATGAGATAGAGCGCGACGATGCCAAAAATGACAGCAAACACTTTGGTAAGTTGGCCTGGTATGTACTGATAGCTGCCTATGATGAAAGAACTTGCTCACAGCTTAGAGATTATCTCTGTGATGGCGGTGAAGCTTTTGCTCAAACGTCTTTACAACAAGTTGCTGAAGAATCCAACACGGGGGTGAAACTACAGACAGCTACTTTTAGTGACGAAACTGTGCGTGGCGATGCTGCTGCAGCTAACGCTAAAAAAGTGGATTTACCATCATCTCGTCAACGTAAAGGCAAAGCTAAGGCTGGGGAAAAGGGGAAAGGGAAAGGAAAAGCTACAGCATCAAAGAAGACTGGCAAAGATGACGCAAGGATGGTGCCAGTACATCGACAACGCAGCTATTTAAAGGTATTTTTCACTACTGAAAGAAATGTCACTTACGTGTTTAACAAAGAATCACTTTTATTAGCACCAGTTGAAAGGAACTTGGTTCTTGTGGCAACTGGCTCAAGGTCAAATGTTATCTTAAGGCCAGGCGATGAAGCAAACAAGCAAACGGAAGAGGATTCACCTCCAATAAAATTGTTGTCATCACGCGTGATAATCATACATCCTCTGACGGGATGCAGTGATCGCTACAGTTTACTGAGGACTCTATGTGAAGTTGAACCACGTTACGTTGTGCTGTATGATGCACAAATGCAGTTTATACGTCAGCTAGAGGTTTACAAGGCTTCAAGACCTGGAATTCCTCTTCGTGTGTATTTCTTAATTTACACAGGTTCTGTGGAGGAACAGAAATACTTAACAACTCTTCGCAAAGAAAAAGAGGCATTTGAGGTGCTCATAAAAAATAAAGGAACCATGGTTGTACCCGAAGAACGTGAAGGAAAGACAGATGCATCTATGATGCTCAGTAGAGATCCATCCAAAGCAACTGATGCTGTGAGCACAAGGAAAGCAGGAGCACTGGACGGAAAAAACAAGGCGCCTAGAAAGGTCATTGTTGACATGCGAGAGTTTCGCAGTGAACTTCCTTCGCTGATACATCGGAGAGGAATTGATGTAGAACCTGTCACGTTAGAGGTCGGAGACTACATTCTCACCCCAGACATGTGTGTTGAACGAAAGAGCATAAGTGATCTGATTGGCTCCCTAAACAACGGAAGGCTGTACAACCAGGCGGTTGCAATGACCAGATTTTACAAAAGACCCATTCTGTTAATTGAATTTGACCCTAACAAGTCATTTTCATTGCAGGCAAAATCTAGTTTGTCAAGTGAAGTCTCCTTCAATGACATCTCTTCTAAGTTGTCTTTACTTACACTTCATTTTCCAAAGTTAAGAATCTTATGGTGTCACAGTCCTTATGCAACTGCTGAGTTATTTGACGATTTGAAGGCGAATCACCCTGAACCAGATGCTAACACAGCCATGGCTGTAGGATCTGACCCCACAGCAGCTGCGTCTGATATCACATACAACATAGGACCACAGGACTTTATTTTGAAGCTTCCCGGAATAAATTTCAAGAATTACAGATCTATAATGAAAAACGTCGAAAGTATTCAAGAACTTTTTGCGTTGTCACAAGAAAGACTCGCTACTATTTTAGGCAATGCTGCCAGCGCAAAGCAACTCTGGGAGTTTATTCACACCGACAACAAGCCTCGTGCGAAAGCACAAACTTCGTCAAAAGGCAAAAGATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92889	DNA repair endonuclease XPF OS=Homo sapiens OX=9606 GN=ERCC4 PE=1 SV=3
Q9QZD4	DNA repair endonuclease XPF OS=Mus musculus OX=10090 GN=Ercc4 PE=1 SV=3
Q9QYM7	DNA repair endonuclease XPF OS=Cricetulus griseus OX=10029 GN=ERCC4 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002037 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02732 all species →	ERCC4	ERCC4 domain	Domain	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006166 all species →	Domain	ERCC4 domain	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR006167 all species →	Family	DNA repair protein XPF	Interproscan
IPR047520 all species →	Domain	DNA repair endonuclease XPF, nuclease domain	Interproscan
IPR011335 all species →	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR010994 all species →	Homologous_superfamily	RuvA domain 2-like	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10150 all species →	DNA REPAIR ENDONUCLEASE XPF	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0004520 all species →	Molecular Function	DNA endonuclease activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0000014 all species →	Molecular Function	single-stranded DNA endodeoxyribonuclease activity	Interproscan
GO:0000110 all species →	Cellular Component	nucleotide-excision repair factor 1 complex	Interproscan
GO:0000712 all species →	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0006296 all species →	Biological Process	obsolete nucleotide-excision repair, DNA incision, 5'-to lesion	Interproscan
GO:1901255 all species →	Biological Process	nucleotide-excision repair involved in interstrand cross-link repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap14.1533.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.