Detailed information of evm.model.Ap14.1550 in Astrangia poculata

Genomic Location: Ap14:16695570...16704076
NR annotation: XP_020615703.1, transcription elongation factor A N-terminal and central domain-containing protein 2-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B0UYI1Transcription elongation factor A N-terminal and central domain-containing protein 2 OS=Danio rerio OX=7955 GN=tceanc2 PE=3 SV=1
A5PKE4Transcription elongation factor A N-terminal and central domain-containing protein 2 OS=Bos taurus OX=9913 GN=TCEANC2 PE=2 SV=1
Q5XIC7Transcription elongation factor A N-terminal and central domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Tceanc2 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009250 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07500
all species →		TFIIS_MTranscription factor S-II (TFIIS), central domainDomainInterproscan
PF08711
all species →		Med26TFIIS helical bundle-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035441
all species →		Homologous_superfamilyTFIIS/LEDGF domain superfamilyInterproscan
IPR003617
all species →		DomainTranscription elongation factor, TFIIS/CRSP70, N-terminal, sub-typeInterproscan
IPR017923
all species →		DomainTranscription factor IIS, N-terminalInterproscan
IPR003618
all species →		DomainTranscription elongation factor S-II, central domainInterproscan
IPR036575
all species →		Homologous_superfamilyTranscription elongation factor S-II, central domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11477
all species →		TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006351
all species →		Biological ProcessDNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap14.1550.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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