Gene detail

Detailed information of evm.model.Ap14.1608 in Astrangia poculata

Genomic Location: Ap14:17412911...17424343
NR annotation: XP_022785204.1, nuclear factor 1 C-type-like isoform X1 [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap14.1608

atgggcctcagtgaacggggtaaagcggagggcagaatggttagcggcgagagtacgtctctagtcgacttcgttaaaatgactaaccccggtttatttgatttccaggacgagatacactcgttcatcgaagccttgcttcctcatgtcaaggcttttgcctatacgtggtttaatttgcaagcaagaaagcgaaagcactacaagaaacatgaagtgcgaatgactcctgacgaggagaggagatgcaaggaggagcttgatgctgaagcgcctgaagtgaagcaaaagtgggcttctaggcttttggcaaagctgcgaaaagacattcgccaagaatgcagagaggacttcgtgatgtcggtggttggaaacaaacccggctcgtcgtgccgttgcgtcatttccaaccccgatcagaaggggaaaatgaggcgaatagattgcctccgtcaagctgacaaagtttggaggctagatctagtgatggtgattttattccgaggcattcctttggaaagcaccgatggcgagcgcctgggcaagtcgcaacactgccagagtcagactctgtgtgttttgcccaaccatatcacggtgacagttcgagagctggatctatttctagccaacttcatgtgtaaccgagagcacaaacaggattccaacagtcccgtacgaagttctgccgatccagattctcaccaaattggcacagaacagaatttggtttcatctggtgtgtttacagtagctgaactctatacctatgccagaacaccgatcaagtgtattggttcatctcatggtctcatgttatccgacctagagagcccatcatacagtgatgcaggccttgagcagcgttttccaagtgcagtaaatatacacccacggccagatccatatgacctaaggtacagaaaacgaagtcggacaattagctctgtttcatcagttgatgaagattgtgatgaggatgacagggatagtacagggctctatgtccagtcaccagcaagtttctcctcccaaggatctaactggcaaaatgatgtagactcagggtccagtgttattcactctcccatggtcccataccctcccaagatcaaaccagaacagaactgctcaggatacagtccgatggaaaaccacaactctgcaatcacttgctgtaatgtgaatgaaccacagtcacctgcagtcacatcatatggtggtcaagtgccgcagctgcacaacagacagatgagagactgcaacatgaatgacacatcattcattatgcagttagcaacagcacctaaaggccatgtaccagcgagttgtgggtttggtatgaatattccacagcagggatttacattccgcctcccaatgccaaatgctcacattccttctgttggttctgctccttgtcgtactggcccaccttctagtgatttcatccagcttcttgagaggccccggtcgagttcagcaccaaatggtaggcactatgttcctgggacatcagcagtcatacctccccctttaacaaggtcacaaagtggtaacagtattatacaaagtactggtgggaacaccatgaatgcagcagatccacggaattctccagtacatcagcagcaacagtctcctgtgtcaacaagcccaagtaaaacaagtcctccttcaggaataacactcaacaccactgttcagataatccagtctccaacaaacaatcccaatagtgcggcatcaacatatggcaaccaaaatcctcaagtgttcagctacccaaacttgccacctggttgtctatctggtgtcagccctcctctaccaatgggcttgtttacatcaccaggcaatgctcctaggggtaacatacctactcgctggcctgcggccattcctgtggcacctgtctccagtagtggaaatgttgtatctggagaggagtcaccagactaccagatggtgcagggatttgggaatatgaaccctgacgagggcatgctggaagagaggaatttcttcccagtgaacaacactgcagagtcaatggatgtcatgtctgctcggatatcatcctga

Transcript

evm.model.Ap14.1608

ATGGGCCTCAGTGAACGGGGTAAAGCGGAGGGCAGAATGGTTAGCGGCGAGAGTACGTCTCTAGTCGACTTCGTTAAAATGACTAACCCCGGTTTATTTGATTTCCAGGACGAGATACACTCGTTCATCGAAGCCTTGCTTCCTCATGTCAAGGCTTTTGCCTATACGTGGTTTAATTTGCAAGCAAGAAAGCGAAAGCACTACAAGAAACATGAAGTGCGAATGACTCCTGACGAGGAGAGGAGATGCAAGGAGGAGCTTGATGCTGAAGCGCCTGAAGTGAAGCAAAAGTGGGCTTCTAGGCTTTTGGCAAAGCTGCGAAAAGACATTCGCCAAGAATGCAGAGAGGACTTCGTGATGTCGGTGGTTGGAAACAAACCCGGCTCGTCGTGCCGTTGCGTCATTTCCAACCCCGATCAGAAGGGGAAAATGAGGCGAATAGATTGCCTCCGTCAAGCTGACAAAGTTTGGAGGCTAGATCTAGTGATGGTGATTTTATTCCGAGGCATTCCTTTGGAAAGCACCGATGGCGAGCGCCTGGGCAAGTCGCAACACTGCCAGAGTCAGACTCTGTGTGTTTTGCCCAACCATATCACGGTGACAGTTCGAGAGCTGGATCTATTTCTAGCCAACTTCATGTGTAACCGAGAGCACAAACAGGATTCCAACAGTCCCGTACGAAGTTCTGCCGATCCAGATTCTCACCAAATTGGCACAGAACAGAATTTGGTTTCATCTGGTGTGTTTACAGTAGCTGAACTCTATACCTATGCCAGAACACCGATCAAGTGTATTGGTTCATCTCATGGTCTCATGTTATCCGACCTAGAGAGCCCATCATACAGTGATGCAGGCCTTGAGCAGCGTTTTCCAAGTGCAGTAAATATACACCCACGGCCAGATCCATATGACCTAAGGTACAGAAAACGAAGTCGGACAATTAGCTCTGTTTCATCAGTTGATGAAGATTGTGATGAGGATGACAGGGATAGTACAGGGCTCTATGTCCAGTCACCAGCAAGTTTCTCCTCCCAAGGATCTAACTGGCAAAATGATGTAGACTCAGGGTCCAGTGTTATTCACTCTCCCATGGTCCCATACCCTCCCAAGATCAAACCAGAACAGAACTGCTCAGGATACAGTCCGATGGAAAACCACAACTCTGCAATCACTTGCTGTAATGTGAATGAACCACAGTCACCTGCAGTCACATCATATGGTGGTCAAGTGCCGCAGCTGCACAACAGACAGATGAGAGACTGCAACATGAATGACACATCATTCATTATGCAGTTAGCAACAGCACCTAAAGGCCATGTACCAGCGAGTTGTGGGTTTGGTATGAATATTCCACAGCAGGGATTTACATTCCGCCTCCCAATGCCAAATGCTCACATTCCTTCTGTTGGTTCTGCTCCTTGTCGTACTGGCCCACCTTCTAGTGATTTCATCCAGCTTCTTGAGAGGCCCCGGTCGAGTTCAGCACCAAATGGTAGGCACTATGTTCCTGGGACATCAGCAGTCATACCTCCCCCTTTAACAAGGTCACAAAGTGGTAACAGTATTATACAAAGTACTGGTGGGAACACCATGAATGCAGCAGATCCACGGAATTCTCCAGTACATCAGCAGCAACAGTCTCCTGTGTCAACAAGCCCAAGTAAAACAAGTCCTCCTTCAGGAATAACACTCAACACCACTGTTCAGATAATCCAGTCTCCAACAAACAATCCCAATAGTGCGGCATCAACATATGGCAACCAAAATCCTCAAGTGTTCAGCTACCCAAACTTGCCACCTGGTTGTCTATCTGGTGTCAGCCCTCCTCTACCAATGGGCTTGTTTACATCACCAGGCAATGCTCCTAGGGGTAACATACCTACTCGCTGGCCTGCGGCCATTCCTGTGGCACCTGTCTCCAGTAGTGGAAATGTTGTATCTGGAGAGGAGTCACCAGACTACCAGATGGTGCAGGGATTTGGGAATATGAACCCTGACGAGGGCATGCTGGAAGAGAGGAATTTCTTCCCAGTGAACAACACTGCAGAGTCAATGGATGTCATGTCTGCTCGGATATCATCCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q12857	Nuclear factor 1 A-type OS=Homo sapiens OX=9606 GN=NFIA PE=1 SV=2
P09414	Nuclear factor 1 A-type OS=Rattus norvegicus OX=10116 GN=Nfia PE=1 SV=2
P17923	Nuclear factor 1 A-type OS=Gallus gallus OX=9031 GN=NFIA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002791 (this species only)
Transcription factor family	CTF_NFI · all TF in this species
Transcription factor family	MH1 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10524 all species →	NfI_DNAbd_pre-N	Nuclear factor I protein pre-N-terminus	Family	Interproscan
PF00859 all species →	CTF_NFI	CTF/NF-I family transcription modulation region	Family	Interproscan
PF03165 all species →	MH1	MH1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019548 all species →	Domain	CTF transcription factor/nuclear factor 1, N-terminal	Interproscan
IPR000647 all species →	Family	CTF transcription factor/nuclear factor 1	Interproscan
IPR020604 all species →	Domain	CTF transcription factor/nuclear factor 1, DNA-binding domain	Interproscan
IPR003619 all species →	Domain	MAD homology 1, Dwarfin-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11492 all species →	NUCLEAR FACTOR I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap14.1608.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.