Gene detail

Detailed information of evm.model.Ap14.1666 in Astrangia poculata

Genomic Location: Ap14:18135603...18157395
NR annotation: XP_020604940.1, vitellogenin-2-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap14.1666

atgaatgccttcttggtaattttcctgacgctgggagcagcttctgcgatgcctcttggctaccagaagggccagcgatacacgtacaaataccaaagcgatgtgacccatgctgtcccgagtggaacggccaagaccctgggactgagagtgaagtgccaagcacatcttgacgttctcacgaaaaccgagattcagatcacgctggcagacattcaagttcaccaagtgatcggaagcctcaaggatccaaaacaacagcaagagaaagcaccagaccagaaagtcgtagcggtcatgcgtcagagacttgaacttcccgtgagggtggtcctgaaggcacaagatggcagtatcaaagaaatcaacgcgcatcctaaggatgatgaatggtcgctgaacatcaaacgcgggctcgtgaatcttttccagatctctccgcgtgcagaccagcaacaagagaaacagtttgttactcagctcgagactacagcagtgggcgagtgtcaggtatcttacgtcatcgtacgggataacagccagtctgcccagaaagaacaagttatgaaggtttccaaggtgataaactacgagaaatgccagaatcgaccggaattcatccagcgcaccttcaacattcagaaatgcgacaaatgtcagcagagcatgggctttgccccataccaccgctcggtcggacagattgagcacactctgaagggctccgataagactggttacatcatcagccgaacagaagctgttgaacaacacgtgatcactccattctctcgctcagatggacaggtgtccgctacagccaggcaaatcttggagttccagaaaccgtccaaggctggacaagctttgaccacactgacaaagaagacaacccacaaacttgtcgctgagaatattgagcaacgagcccgcgagaacgctgattggcaagtagaaatgactaaacaagcggaagtaaccatcaatgaaatgtgccaagcaatccaacagtggaagggccaacaggcagccgaaaagtttacattcctggtcgagcagttgagacagtgtaacaaagatactttggtaaaactggctgataagatgttggcacgacaggacccgtcagagaggaagttttgcattgatgctctctcctttgtggggacccctgaggctgtccaagtcttgaagatgaagatccaggagaagaaaatcaacaaaccagacgagctcaaacgagtgttcctgggactagcatccgcttcgagacccaccgctgaccacatcaatattgcttgggaactgtgtaaccacgccgaagttatgaaggatatgtcatctcgccgccagtgcatgctcacgttcggggccctggtacacaaaatcaatcagaggcccagtctccagcaggacaccaaagctaaggccgcctgtcagcaatacgttaaggaaatactggaccgccttgccaagcagcaaaccacaccagaggagaaggtcatgtacatcaaggctattgggaacgcagcaagctctgaagcgcaagaacagctacacaagatccttaaggacaaaacgcagcctctgcacatcagggtgcaaagtgtctgggccctcaggcgaatcgtccttgtggccagggataaagtgactccaagactcatttccgtctttgctgacgctaaggaaagccccgaactgcgcatggcttgtttcttactactcctgaactctgaacccaactttgcaacactgcaggctgtagcgaatatcgtgaaacgggagatcactagccccatcccaggcccccgcagtaaccaagtggcttcatacgttctttcgcatctatcggctctcgcctaccacaacaacgttttgacaaagaaaaggtcaatgcaggctcgcctggccctccgtctgatgccgaagatgagttatggtctgggttactccaaaggaatgcgattcgcttatcactcagaaaagttccaaacaggatttgagttggaagcaaacaaaatggacgtcccagatagcatgctgccccgaaacatgaacgcgagaatcctactgaacttgatgggttaccagacgagcgcgttagagtttggcgcccgaatcgaaaatatggacgatgtcattgaacaagtgatctccgaagttcgcaaccgacacaagcgttcgttatggggcaacatcctctcctggttcaacgaagagactgaagaggcttcaggcgatgacagtgacgagaaaaatccaacaacccgtcccacacagcgttcaactagcgcaaccagcttttctcgaaggcattctttgcgcaacagtcaatcaagcaccaaagccagcaccaaagccagcaccaaagcaagcaccaggcccaccactcgttcatcgactcgtccaacttcacagccaactggaagtcagaggacttcaacccgaccacgccccacattcccgtcctcagatggacagactaaatcccaacgtgtgtcagcttacatgaaattgttcggggacgaagtgaagttcatggaattcaaacaacaagacatcaaacaattcgcacaggacatttcagatcttctgatgggaaagaaggagcgtattgaatacctcgacaaaggtattgttattaccaagaaaggagtggaaatcacgcaaaggttggagaaagcattccagcttgctcatggccgtcgcatggtgccaacactagctggcatcccacttgatttccagtatcgatctgcggctgtcgtcaaggtgatcgccgctgccaagatgaacattgagccatccataatcagcctgctaaagtggcagaaacttcaactcacaggcggtgcagagattataccaagcattggcgcccacgaacacacacaaattggaatccacactccgtacctgcgcatgggtcttcaggtgaaaaccgctgctcatgctaaccctgaacagaagattgatgtgaactttgacgctggcaaggaatacaaatttacttacaaccttcccaaggaacagcgcgaaatcttgcacgtaaagtacgatacccatggttttgctgaagaaaagaatccagagaactgccagataactcgacagcagatttccctggatttcaagacgcctcacctcaaaaagcttgaaaagacctgcaaaggacaaaacctatttggagttaagttgtgcgtcgaaggacaagtcccagacctccccgcgttaaggcttcagcaagtcccagtcttccccaccattgctctgacggagctgcgcgtttccatggcgcctgcctcagacaaaccaaccgctgtacagtggatacatcaggtggccaagaatgacgacacagaaatgcaagtcctcggccgaatcgacgcttcatcaaactcagttcctcgccaaatcccgtacaaggtgacttacacccgagcaaaccagcaactgttgatcgaggcacagaagatgaaagcacccggatatgaagacagcatgctgacgtgcaccatcaaccgcgcggagggactgaaactacagtttggacaaggcaagcttcaataccaggtctctgcggctgggcaagttcaagaccagggcaagactatgcgcctgcagttgcagtggacagaggttcctgaacaatggaagaaattcttttacaactggaagccccagatctggtactttttgcagcagtttgcttgggtcagacgctcagaacagtttaacaaacaagtggccattgaattttcactaacttcacccatgaccgccctgctcagagtaaaaactccagacgcgattgctgagcgaaccgacctctccctacccgtgagagtcgaccgtttccctcaatccctccaggaaatcaagaactacttttatgctcagtgtgaaatgcaggattccagcattaaagtgtttgatcgactccagtaccagcacaacatcaagggtggatgtccgtatgttctggttcaggatcgcaggcaaggcaaacagagtagaatccagcttactgtgaagattgatcaacaaggccagaagactgtctcagcgaacatccagcaaccctcccaagaggcggggccactgtccagaaggtacagacgtctgatgggaagactcagattcagctgtcaaccaagttgggcctgcacgctacgatccaaggtcagcggatccaggtacttgcatcgcctcttctgcgcagccgtgttcgcggcctgtgtggtgacgctgatggtgaacagtggaacgagtacaaagatccacaagaccgcgttcagcaatcagtggacaaattcatccagtcttggcagcaacattgttaaagaaaagatgaaggaaaaaccagaccgaccaaccggaaatgaccgtttcaattttttattctcaatttag

Transcript

evm.model.Ap14.1666

ATGAATGCCTTCTTGGTAATTTTCCTGACGCTGGGAGCAGCTTCTGCGATGCCTCTTGGCTACCAGAAGGGCCAGCGATACACGTACAAATACCAAAGCGATGTGACCCATGCTGTCCCGAGTGGAACGGCCAAGACCCTGGGACTGAGAGTGAAGTGCCAAGCACATCTTGACGTTCTCACGAAAACCGAGATTCAGATCACGCTGGCAGACATTCAAGTTCACCAAGTGATCGGAAGCCTCAAGGATCCAAAACAACAGCAAGAGAAAGCACCAGACCAGAAAGTCGTAGCGGTCATGCGTCAGAGACTTGAACTTCCCGTGAGGGTGGTCCTGAAGGCACAAGATGGCAGTATCAAAGAAATCAACGCGCATCCTAAGGATGATGAATGGTCGCTGAACATCAAACGCGGGCTCGTGAATCTTTTCCAGATCTCTCCGCGTGCAGACCAGCAACAAGAGAAACAGTTTGTTACTCAGCTCGAGACTACAGCAGTGGGCGAGTGTCAGGTATCTTACGTCATCGTACGGGATAACAGCCAGTCTGCCCAGAAAGAACAAGTTATGAAGGTTTCCAAGGTGATAAACTACGAGAAATGCCAGAATCGACCGGAATTCATCCAGCGCACCTTCAACATTCAGAAATGCGACAAATGTCAGCAGAGCATGGGCTTTGCCCCATACCACCGCTCGGTCGGACAGATTGAGCACACTCTGAAGGGCTCCGATAAGACTGGTTACATCATCAGCCGAACAGAAGCTGTTGAACAACACGTGATCACTCCATTCTCTCGCTCAGATGGACAGGTGTCCGCTACAGCCAGGCAAATCTTGGAGTTCCAGAAACCGTCCAAGGCTGGACAAGCTTTGACCACACTGACAAAGAAGACAACCCACAAACTTGTCGCTGAGAATATTGAGCAACGAGCCCGCGAGAACGCTGATTGGCAAGTAGAAATGACTAAACAAGCGGAAGTAACCATCAATGAAATGTGCCAAGCAATCCAACAGTGGAAGGGCCAACAGGCAGCCGAAAAGTTTACATTCCTGGTCGAGCAGTTGAGACAGTGTAACAAAGATACTTTGGTAAAACTGGCTGATAAGATGTTGGCACGACAGGACCCGTCAGAGAGGAAGTTTTGCATTGATGCTCTCTCCTTTGTGGGGACCCCTGAGGCTGTCCAAGTCTTGAAGATGAAGATCCAGGAGAAGAAAATCAACAAACCAGACGAGCTCAAACGAGTGTTCCTGGGACTAGCATCCGCTTCGAGACCCACCGCTGACCACATCAATATTGCTTGGGAACTGTGTAACCACGCCGAAGTTATGAAGGATATGTCATCTCGCCGCCAGTGCATGCTCACGTTCGGGGCCCTGGTACACAAAATCAATCAGAGGCCCAGTCTCCAGCAGGACACCAAAGCTAAGGCCGCCTGTCAGCAATACGTTAAGGAAATACTGGACCGCCTTGCCAAGCAGCAAACCACACCAGAGGAGAAGGTCATGTACATCAAGGCTATTGGGAACGCAGCAAGCTCTGAAGCGCAAGAACAGCTACACAAGATCCTTAAGGACAAAACGCAGCCTCTGCACATCAGGGTGCAAAGTGTCTGGGCCCTCAGGCGAATCGTCCTTGTGGCCAGGGATAAAGTGACTCCAAGACTCATTTCCGTCTTTGCTGACGCTAAGGAAAGCCCCGAACTGCGCATGGCTTGTTTCTTACTACTCCTGAACTCTGAACCCAACTTTGCAACACTGCAGGCTGTAGCGAATATCGTGAAACGGGAGATCACTAGCCCCATCCCAGGCCCCCGCAGTAACCAAGTGGCTTCATACGTTCTTTCGCATCTATCGGCTCTCGCCTACCACAACAACGTTTTGACAAAGAAAAGGTCAATGCAGGCTCGCCTGGCCCTCCGTCTGATGCCGAAGATGAGTTATGGTCTGGGTTACTCCAAAGGAATGCGATTCGCTTATCACTCAGAAAAGTTCCAAACAGGATTTGAGTTGGAAGCAAACAAAATGGACGTCCCAGATAGCATGCTGCCCCGAAACATGAACGCGAGAATCCTACTGAACTTGATGGGTTACCAGACGAGCGCGTTAGAGTTTGGCGCCCGAATCGAAAATATGGACGATGTCATTGAACAAGTGATCTCCGAAGTTCGCAACCGACACAAGCGTTCGTTATGGGGCAACATCCTCTCCTGGTTCAACGAAGAGACTGAAGAGGCTTCAGGCGATGACAGTGACGAGAAAAATCCAACAACCCGTCCCACACAGCGTTCAACTAGCGCAACCAGCTTTTCTCGAAGGCATTCTTTGCGCAACAGTCAATCAAGCACCAAAGCCAGCACCAAAGCCAGCACCAAAGCAAGCACCAGGCCCACCACTCGTTCATCGACTCGTCCAACTTCACAGCCAACTGGAAGTCAGAGGACTTCAACCCGACCACGCCCCACATTCCCGTCCTCAGATGGACAGACTAAATCCCAACGTGTGTCAGCTTACATGAAATTGTTCGGGGACGAAGTGAAGTTCATGGAATTCAAACAACAAGACATCAAACAATTCGCACAGGACATTTCAGATCTTCTGATGGGAAAGAAGGAGCGTATTGAATACCTCGACAAAGGTATTGTTATTACCAAGAAAGGAGTGGAAATCACGCAAAGGTTGGAGAAAGCATTCCAGCTTGCTCATGGCCGTCGCATGGTGCCAACACTAGCTGGCATCCCACTTGATTTCCAGTATCGATCTGCGGCTGTCGTCAAGGTGATCGCCGCTGCCAAGATGAACATTGAGCCATCCATAATCAGCCTGCTAAAGTGGCAGAAACTTCAACTCACAGGCGGTGCAGAGATTATACCAAGCATTGGCGCCCACGAACACACACAAATTGGAATCCACACTCCGTACCTGCGCATGGGTCTTCAGGTGAAAACCGCTGCTCATGCTAACCCTGAACAGAAGATTGATGTGAACTTTGACGCTGGCAAGGAATACAAATTTACTTACAACCTTCCCAAGGAACAGCGCGAAATCTTGCACGTAAAGTACGATACCCATGGTTTTGCTGAAGAAAAGAATCCAGAGAACTGCCAGATAACTCGACAGCAGATTTCCCTGGATTTCAAGACGCCTCACCTCAAAAAGCTTGAAAAGACCTGCAAAGGACAAAACCTATTTGGAGTTAAGTTGTGCGTCGAAGGACAAGTCCCAGACCTCCCCGCGTTAAGGCTTCAGCAAGTCCCAGTCTTCCCCACCATTGCTCTGACGGAGCTGCGCGTTTCCATGGCGCCTGCCTCAGACAAACCAACCGCTGTACAGTGGATACATCAGGTGGCCAAGAATGACGACACAGAAATGCAAGTCCTCGGCCGAATCGACGCTTCATCAAACTCAGTTCCTCGCCAAATCCCGTACAAGGTGACTTACACCCGAGCAAACCAGCAACTGTTGATCGAGGCACAGAAGATGAAAGCACCCGGATATGAAGACAGCATGCTGACGTGCACCATCAACCGCGCGGAGGGACTGAAACTACAGTTTGGACAAGGCAAGCTTCAATACCAGGTCTCTGCGGCTGGGCAAGTTCAAGACCAGGGCAAGACTATGCGCCTGCAGTTGCAGTGGACAGAGGTTCCTGAACAATGGAAGAAATTCTTTTACAACTGGAAGCCCCAGATCTGGTACTTTTTGCAGCAGTTTGCTTGGGTCAGACGCTCAGAACAGTTTAACAAACAAGTGGCCATTGAATTTTCACTAACTTCACCCATGACCGCCCTGCTCAGAGTAAAAACTCCAGACGCGATTGCTGAGCGAACCGACCTCTCCCTACCCGTGAGAGTCGACCGTTTCCCTCAATCCCTCCAGGAAATCAAGAACTACTTTTATGCTCAGTGTGAAATGCAGGATTCCAGCATTAAAGTGTTTGATCGACTCCAGTACCAGCACAACATCAAGGGTGGATGTCCGTATGTTCTGGTTCAGGATCGCAGGCAAGGCAAACAGAGTAGAATCCAGCTTACTGTGAAGATTGATCAACAAGGCCAGAAGACTGTCTCAGCGAACATCCAGCAACCCTCCCAAGAGGCGGGGCCACTGTCCAGAAGGTACAGACGTCTGATGGGAAGACTCAGATTCAGCTGTCAACCAAGTTGGGCCTGCACGCTACGATCCAAGGTCAGCGGATCCAGGTACTTGCATCGCCTCTTCTGCGCAGCCGTGTTCGCGGCCTGTGTGGTGACGCTGATGGTGAACAGTGGAACGAGTACAAAGATCCACAAGACCGCGTTCAGCAATCAGTGGACAAATTCATCCAGTCTTGGCAGCAACATTGTTAAAGAAAAGATGAAGGAAAAACCAGACCGACCAACCGGAAATGACCGTTTCAATTTTTTATTCTCAATTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91062	Vitellogenin OS=Ichthyomyzon unicuspis OX=30308 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006213 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01347 all species →	Vitellogenin_N	Lipoprotein amino terminal region	Repeat	Interproscan
PF09172 all species →	Vit_open_b-sht	Vitellinogen, open beta-sheet	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001747 all species →	Domain	Vitellogenin, N-terminal	Interproscan
IPR011030 all species →	Homologous_superfamily	Lipovitellin-phosvitin complex, superhelical domain	Interproscan
IPR015817 all species →	Homologous_superfamily	Vitellinogen, open beta-sheet, subdomain 1	Interproscan
IPR050733 all species →	Family	Vitellogenin/Apolipophorin	Interproscan
IPR037088 all species →	Homologous_superfamily	Vitellinogen, beta-sheet shell domain superfamily	Interproscan
IPR015819 all species →	Homologous_superfamily	Lipid transport protein, beta-sheet shell	Interproscan
IPR015255 all species →	Domain	Vitellinogen, open beta-sheet	Interproscan
IPR015816 all species →	Homologous_superfamily	Vitellinogen, beta-sheet N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23345 all species →	VITELLOGENIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005319 all species →	Molecular Function	lipid transporter activity	Interproscan
GO:0006869 all species →	Biological Process	lipid transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap14.1666.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.