Gene detail

Detailed information of evm.model.Ap14.1795 in Astrangia poculata

Genomic Location: Ap14:19746152...19753198
NR annotation: XP_020624718.1, DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80UW8	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10090 GN=Polr2e PE=1 SV=1
Q5R587	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=9601 GN=POLR2E PE=2 SV=1
B0BNE2	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus OX=10116 GN=Polr2e PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006699 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03871 all species →	RNA_pol_Rpb5_N	RNA polymerase Rpb5, N-terminal domain	Domain	Interproscan
PF01191 all species →	RNA_pol_Rpb5_C	RNA polymerase Rpb5, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005571 all species →	Domain	RNA polymerase, Rpb5, N-terminal	Interproscan
IPR036710 all species →	Homologous_superfamily	RNA polymerase Rpb5, N-terminal domain superfamily	Interproscan
IPR000783 all species →	Domain	RNA polymerase, subunit H/Rpb5 C-terminal	Interproscan
IPR035913 all species →	Homologous_superfamily	RPB5-like RNA polymerase subunit superfamily	Interproscan
IPR014381 all species →	Family	DNA-directed RNA polymerase subunit Rpo5/Rpb5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10535 all species →	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0001054 all species →	Molecular Function	RNA polymerase I activity	Interproscan
GO:0001055 all species →	Molecular Function	RNA polymerase II activity	Interproscan
GO:0001056 all species →	Molecular Function	RNA polymerase III activity	Interproscan
GO:0005665 all species →	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0005666 all species →	Cellular Component	RNA polymerase III complex	Interproscan
GO:0005736 all species →	Cellular Component	RNA polymerase I complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03013	RPABC1, RPB5, POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.