Gene detail

Detailed information of evm.model.Ap14.1870 in Astrangia poculata

Genomic Location: Ap14:20426665...20440594
NR annotation: CAH3129421.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap14.1870

atgtcgaaaaaagacgcatacacagttattccagttgaagaaaaggaaatgaaagaaagaccgaatgcaaccgaggcaacagatcaggccgaagatgagttggaggagaaatttgacaaagacttctggctaaaggtgcaacacaaagtgaaggtcacaaatgtaccatggaacagagcgatggatgaagtgagagtggatcggttgattgtaaaacacggcaagaacgctcttctggtcatcattcacgaatggccacaaaagaaaaaatataaagacaaaccagagctgataccaagcttagaatatctgatcagtcgattaacagagatcattctagagagagatatcaaggaagactacaaatatttccgtgttccttcaaaagatgacccagctcgtccaacactactgcatcttgctgctcaacaaaatttcttgcacgttgccaagtccttagtggaacgttacccaggtcttatgtacttatggactaaagaggaaggcgacaaccccagttatctaccagttgaagtggctttaaagaagtacaaggatgacacagcagcttatctgatttctcagatgaggcatgatcgagttcagaaactgtttctttgtaaagatgatgaagaccagtcacctatgaagttttattttggacattacatcagtgttcaagatccaaagaccaaggaacctgcaatgaagaaaacagttctggcagtattggacaagctcattaaccctcactggccttacctgccacagagcaaggaagatgacgaaaacctggatgaaattgagcgtgctttgagtagcgttcctgatgacccaatgaactatgacttcttttaccacatcctggaggctgacgacaatggaagacagcctaaattagaggtggctacagaagtcgatgagcatggaacaccgattaaaactcagacaatacccaatgagaaatttaatcataagtcactgtcgtgcctgagacgtattgcagagagtggaaacaaggaggcagtgcagcaccctgttgtccgaatgctggtctccagaaaatggaacaacttcgcccattggtggttttgcgttcaagcttcattctacatcgttttcctaacactgttatcatatgcgctgatctatggctcaactgttgagaatccaacacagtacagtggtaaagcagatggtctgcggttgttctctgaaattttcaccatcatctttctcatgttttactttttcgaggaagtcaaccaagcggaaagggaatggagagcgtattttaaggatccatacaactattttgattggcttggccttgtcttaacatttcttgtcatccctctacgctttgctgaagtcaaatctcaatggagtgttgctgggctcggctacttgtttcattttctccgcctcttcaaattttcctgtgtcacaagaaccacaggtctgtacaccaagactcttgccaggattatctaccgtgacatatctcgcttcagtgtcgtgtttatcatcgtgtttctgggattctgtggcgggatgtacatggcactaaaagctacaggctcacaggagttgttcagtaattacgcctggttgatgttagctgccgtccgagctcttgttgaacagcaacctgctgaagaagattattccaagttcagctggttgtccatcctgattcttctggcctacatggcgatggtgatagtcattcttctgaacattctcatcgcccagatgagctatacctacagcgaagcgaagaagaccgctaagctgcagtatgctattgatacgatgtttatcgtcactcgactggagtacagcagatttgtcagatggaatttaagggtaaaaaattactcagatggtgactggatcagcgaagaagatttagcaaaagaaatgttagaatacacagatgatcgacatccttgggaaacaatggaagacagactgacggacatcagggaaataatgaggaaagttgtcagaagaggaaaggagaaggaaccttgggactcagtggaagaaaagttgactcatttagcagctatcgtagagagacttcctgaatccaaggctcatgcgcagtaa

Transcript

evm.model.Ap14.1870

ATGTCGAAAAAAGACGCATACACAGTTATTCCAGTTGAAGAAAAGGAAATGAAAGAAAGACCGAATGCAACCGAGGCAACAGATCAGGCCGAAGATGAGTTGGAGGAGAAATTTGACAAAGACTTCTGGCTAAAGGTGCAACACAAAGTGAAGGTCACAAATGTACCATGGAACAGAGCGATGGATGAAGTGAGAGTGGATCGGTTGATTGTAAAACACGGCAAGAACGCTCTTCTGGTCATCATTCACGAATGGCCACAAAAGAAAAAATATAAAGACAAACCAGAGCTGATACCAAGCTTAGAATATCTGATCAGTCGATTAACAGAGATCATTCTAGAGAGAGATATCAAGGAAGACTACAAATATTTCCGTGTTCCTTCAAAAGATGACCCAGCTCGTCCAACACTACTGCATCTTGCTGCTCAACAAAATTTCTTGCACGTTGCCAAGTCCTTAGTGGAACGTTACCCAGGTCTTATGTACTTATGGACTAAAGAGGAAGGCGACAACCCCAGTTATCTACCAGTTGAAGTGGCTTTAAAGAAGTACAAGGATGACACAGCAGCTTATCTGATTTCTCAGATGAGGCATGATCGAGTTCAGAAACTGTTTCTTTGTAAAGATGATGAAGACCAGTCACCTATGAAGTTTTATTTTGGACATTACATCAGTGTTCAAGATCCAAAGACCAAGGAACCTGCAATGAAGAAAACAGTTCTGGCAGTATTGGACAAGCTCATTAACCCTCACTGGCCTTACCTGCCACAGAGCAAGGAAGATGACGAAAACCTGGATGAAATTGAGCGTGCTTTGAGTAGCGTTCCTGATGACCCAATGAACTATGACTTCTTTTACCACATCCTGGAGGCTGACGACAATGGAAGACAGCCTAAATTAGAGGTGGCTACAGAAGTCGATGAGCATGGAACACCGATTAAAACTCAGACAATACCCAATGAGAAATTTAATCATAAGTCACTGTCGTGCCTGAGACGTATTGCAGAGAGTGGAAACAAGGAGGCAGTGCAGCACCCTGTTGTCCGAATGCTGGTCTCCAGAAAATGGAACAACTTCGCCCATTGGTGGTTTTGCGTTCAAGCTTCATTCTACATCGTTTTCCTAACACTGTTATCATATGCGCTGATCTATGGCTCAACTGTTGAGAATCCAACACAGTACAGTGGTAAAGCAGATGGTCTGCGGTTGTTCTCTGAAATTTTCACCATCATCTTTCTCATGTTTTACTTTTTCGAGGAAGTCAACCAAGCGGAAAGGGAATGGAGAGCGTATTTTAAGGATCCATACAACTATTTTGATTGGCTTGGCCTTGTCTTAACATTTCTTGTCATCCCTCTACGCTTTGCTGAAGTCAAATCTCAATGGAGTGTTGCTGGGCTCGGCTACTTGTTTCATTTTCTCCGCCTCTTCAAATTTTCCTGTGTCACAAGAACCACAGGTCTGTACACCAAGACTCTTGCCAGGATTATCTACCGTGACATATCTCGCTTCAGTGTCGTGTTTATCATCGTGTTTCTGGGATTCTGTGGCGGGATGTACATGGCACTAAAAGCTACAGGCTCACAGGAGTTGTTCAGTAATTACGCCTGGTTGATGTTAGCTGCCGTCCGAGCTCTTGTTGAACAGCAACCTGCTGAAGAAGATTATTCCAAGTTCAGCTGGTTGTCCATCCTGATTCTTCTGGCCTACATGGCGATGGTGATAGTCATTCTTCTGAACATTCTCATCGCCCAGATGAGCTATACCTACAGCGAAGCGAAGAAGACCGCTAAGCTGCAGTATGCTATTGATACGATGTTTATCGTCACTCGACTGGAGTACAGCAGATTTGTCAGATGGAATTTAAGGGTAAAAAATTACTCAGATGGTGACTGGATCAGCGAAGAAGATTTAGCAAAAGAAATGTTAGAATACACAGATGATCGACATCCTTGGGAAACAATGGAAGACAGACTGACGGACATCAGGGAAATAATGAGGAAAGTTGTCAGAAGAGGAAAGGAGAAGGAACCTTGGGACTCAGTGGAAGAAAAGTTGACTCATTTAGCAGCTATCGTAGAGAGACTTCCTGAATCCAAGGCTCATGCGCAGTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000582 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027359 all species →	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan
IPR024862 all species →	Family	Transient receptor potential cation channel subfamily V	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10582 all species →	TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0005262 all species →	Molecular Function	calcium channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0098703 all species →	Biological Process	calcium ion import across plasma membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04975	TRPV6; transient receptor potential cation channel subfamily V member 6	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.