Gene detail

Detailed information of evm.model.Ap14.1901 in Astrangia poculata

Genomic Location: Ap14:20778218...20779196
NR annotation: XP_020624761.1, recQ-mediated genome instability protein 2-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010811 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16100 all species →	RMI2	RecQ-mediated genome instability protein 2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR032245 all species →	Family	RecQ-mediated genome instability protein 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33962 all species →	RECQ-MEDIATED GENOME INSTABILITY PROTEIN 2 RMI2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0016607 all species →	Cellular Component	nuclear speck	Interproscan
GO:0033045 all species →	Biological Process	regulation of sister chromatid segregation	Interproscan
GO:0043007 all species →	Biological Process	maintenance of rDNA	Interproscan
GO:2000042 all species →	Biological Process	negative regulation of double-strand break repair via homologous recombination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15365	RMI2; RecQ-mediated genome instability protein 2	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.