Gene detail

Detailed information of evm.model.Ap14.2017 in Astrangia poculata

Genomic Location: Ap14:22061461...22071587
NR annotation: XP_020607474.1, flowering time control protein FCA-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap14.2017

atgaacggggcagttaagttagaaaacaactccgagataggaggtgatccctcgggaaaggtagaatttgaaaaacgtcgatggattttgattacaaatataccagatggtgtagatttagaggatttgaaggacaatttccttaatggatttgatgtcgtggatgtcagagtagaaaagaatacagcgcacgttctccttggaactccagagcaggctataaatgctatcaactctctaaatggtcagaattttcatggttatgttgttggagtgtcccttgctccacctgacagcttcttgtttgttggcaatttgccatttgaattcactgaggagcagtttaggagcttaatgagcccttttggaccaatagagagaatatttctagtgcgaagtttgttcactggggaaagcaaaggctatggttttgtggattatataaatcgtgagtctgcttctctagccaaacagcaattgatgagcacaggctcaaaatatgttggaggaagaatattgagggtgaactttgcagaggctaatctgttgacttatgaagatttgcactcaaagacactgtttgtggatagactgcctcgcgatttcaccaatggtgatgtgttaagagatttgttcagtcagagtgggacagttacatttgcacaggtggctgtgaaccaagctggtatttcacggggatttgcctttgttgattatgtgacggcagaagaagcagaaagaggtcaaaaggcccataatggggcattgttggaagggaccaatgtccgtgtggcttatgggactccaggaaggactggggcaagcatacttggtggccaccataacacaagtgtgggaggtcaatcacaatttggagctcgtcccaggggtcctactcctcaaggtgcagatgtgatgggtgcccgagggccacgccctcttatgggaccacgtcctcttatgggatcagaaccttggcagcaaatgtcaatgtcgcgaggccatcctggaagaccaccaagacctttaatgagacctgggcacccaggtgcaaggttcatgggggctaggccccgaggaccctctccagggggtgcaagaggtgctatgtttggtcatggacccaggccccttctgggcaggcccccaggagcaagagccatgatgagacatgcaggacccaggggctttgttggtatgggtgtaggaggcccaccaggtgtgaggcccatggcaccaaggggaggagccatgcagccacgacctttaatggactttggagagcagcttgatgggacagctttctatcctgagcaagtgcagactggtccagttggtattgacctctctcagcagcccatgaatgacaccatacccacccttatgggtgaaccaatgatgggaggtggcttcgtgcctgctgcagacccaggattctatggtcaaactaccgctcaacccatggcacaacagcagcaggaggtgttggcacctgctcctactcagcagcaaggaatgatagtacagtctcaacaacagggacccagaactgcagtacctcaattgatgcaagttcagactgcccctggtgcacccattatgtcatatcctgggacccatgcacaagtggctgtaattccacaggcaccccaacaacaggtcatgataccaacacagcagatccctaacagtcaggtgatgtatgccacacccactgccatgccgacacaagccgtagtcccccaggtggtacaacctgatccagcaccactcatggcgatgccggctcctggtgtgacccctggtgttgctgtggctgggcaaacagattttaatacagcacagtatggagtgcccgggatacaacagattgttccaggtgacccagctggtaatacagtagtgagctctgggtacgttgtactcccagcagacccaacccatcaaactacatattatgcaccacaggatatgcagtctcaatctctgccccaatatactacagcaggtcagatgccaggacagcaacctgttgtccagttacctgtcggtgcagttcaacaaggagctgttattcaaacccaggtaccgtcccaacctactcctgtacccatggtaacccctcagacaccacagtatcagtggtatcagcaggtaccgtcagctgttggaaatgtggcagtctccactccgatcactcaaaacacacatatgcaagtgacatctttaggaggaacccaatggcctcaggctgaacaacaactacctgctcaacctttaatgactgtaccaaccagtggggtgtatggacaaatccagcaaactcaacaataccagccgcaacaagcagtggcacctggcgcagaaacagtagtctattaccaacagccgcagcagcagccccagcagcttcagcaacagctgcagatgcagatgcagcagccaggcatgtaccctggtatgacggacttgacagtcggcagtcagcaaggttaccctgtacccagtaatgagcaggccacagggtacccaaatgccagtgtcgctccacagcattctgctcctccagttgtgtacaacagtcaacaaccacaacaactagttgcaccaggcgctcatcaacagcttagtcaaaagagggctgcagaaggagatgcgggactctatagtcagcagggacatcccagttactatgacaacagcaaacgactgcgttattga

Transcript

evm.model.Ap14.2017

ATGAACGGGGCAGTTAAGTTAGAAAACAACTCCGAGATAGGAGGTGATCCCTCGGGAAAGGTAGAATTTGAAAAACGTCGATGGATTTTGATTACAAATATACCAGATGGTGTAGATTTAGAGGATTTGAAGGACAATTTCCTTAATGGATTTGATGTCGTGGATGTCAGAGTAGAAAAGAATACAGCGCACGTTCTCCTTGGAACTCCAGAGCAGGCTATAAATGCTATCAACTCTCTAAATGGTCAGAATTTTCATGGTTATGTTGTTGGAGTGTCCCTTGCTCCACCTGACAGCTTCTTGTTTGTTGGCAATTTGCCATTTGAATTCACTGAGGAGCAGTTTAGGAGCTTAATGAGCCCTTTTGGACCAATAGAGAGAATATTTCTAGTGCGAAGTTTGTTCACTGGGGAAAGCAAAGGCTATGGTTTTGTGGATTATATAAATCGTGAGTCTGCTTCTCTAGCCAAACAGCAATTGATGAGCACAGGCTCAAAATATGTTGGAGGAAGAATATTGAGGGTGAACTTTGCAGAGGCTAATCTGTTGACTTATGAAGATTTGCACTCAAAGACACTGTTTGTGGATAGACTGCCTCGCGATTTCACCAATGGTGATGTGTTAAGAGATTTGTTCAGTCAGAGTGGGACAGTTACATTTGCACAGGTGGCTGTGAACCAAGCTGGTATTTCACGGGGATTTGCCTTTGTTGATTATGTGACGGCAGAAGAAGCAGAAAGAGGTCAAAAGGCCCATAATGGGGCATTGTTGGAAGGGACCAATGTCCGTGTGGCTTATGGGACTCCAGGAAGGACTGGGGCAAGCATACTTGGTGGCCACCATAACACAAGTGTGGGAGGTCAATCACAATTTGGAGCTCGTCCCAGGGGTCCTACTCCTCAAGGTGCAGATGTGATGGGTGCCCGAGGGCCACGCCCTCTTATGGGACCACGTCCTCTTATGGGATCAGAACCTTGGCAGCAAATGTCAATGTCGCGAGGCCATCCTGGAAGACCACCAAGACCTTTAATGAGACCTGGGCACCCAGGTGCAAGGTTCATGGGGGCTAGGCCCCGAGGACCCTCTCCAGGGGGTGCAAGAGGTGCTATGTTTGGTCATGGACCCAGGCCCCTTCTGGGCAGGCCCCCAGGAGCAAGAGCCATGATGAGACATGCAGGACCCAGGGGCTTTGTTGGTATGGGTGTAGGAGGCCCACCAGGTGTGAGGCCCATGGCACCAAGGGGAGGAGCCATGCAGCCACGACCTTTAATGGACTTTGGAGAGCAGCTTGATGGGACAGCTTTCTATCCTGAGCAAGTGCAGACTGGTCCAGTTGGTATTGACCTCTCTCAGCAGCCCATGAATGACACCATACCCACCCTTATGGGTGAACCAATGATGGGAGGTGGCTTCGTGCCTGCTGCAGACCCAGGATTCTATGGTCAAACTACCGCTCAACCCATGGCACAACAGCAGCAGGAGGTGTTGGCACCTGCTCCTACTCAGCAGCAAGGAATGATAGTACAGTCTCAACAACAGGGACCCAGAACTGCAGTACCTCAATTGATGCAAGTTCAGACTGCCCCTGGTGCACCCATTATGTCATATCCTGGGACCCATGCACAAGTGGCTGTAATTCCACAGGCACCCCAACAACAGGTCATGATACCAACACAGCAGATCCCTAACAGTCAGGTGATGTATGCCACACCCACTGCCATGCCGACACAAGCCGTAGTCCCCCAGGTGGTACAACCTGATCCAGCACCACTCATGGCGATGCCGGCTCCTGGTGTGACCCCTGGTGTTGCTGTGGCTGGGCAAACAGATTTTAATACAGCACAGTATGGAGTGCCCGGGATACAACAGATTGTTCCAGGTGACCCAGCTGGTAATACAGTAGTGAGCTCTGGGTACGTTGTACTCCCAGCAGACCCAACCCATCAAACTACATATTATGCACCACAGGATATGCAGTCTCAATCTCTGCCCCAATATACTACAGCAGGTCAGATGCCAGGACAGCAACCTGTTGTCCAGTTACCTGTCGGTGCAGTTCAACAAGGAGCTGTTATTCAAACCCAGGTACCGTCCCAACCTACTCCTGTACCCATGGTAACCCCTCAGACACCACAGTATCAGTGGTATCAGCAGGTACCGTCAGCTGTTGGAAATGTGGCAGTCTCCACTCCGATCACTCAAAACACACATATGCAAGTGACATCTTTAGGAGGAACCCAATGGCCTCAGGCTGAACAACAACTACCTGCTCAACCTTTAATGACTGTACCAACCAGTGGGGTGTATGGACAAATCCAGCAAACTCAACAATACCAGCCGCAACAAGCAGTGGCACCTGGCGCAGAAACAGTAGTCTATTACCAACAGCCGCAGCAGCAGCCCCAGCAGCTTCAGCAACAGCTGCAGATGCAGATGCAGCAGCCAGGCATGTACCCTGGTATGACGGACTTGACAGTCGGCAGTCAGCAAGGTTACCCTGTACCCAGTAATGAGCAGGCCACAGGGTACCCAAATGCCAGTGTCGCTCCACAGCATTCTGCTCCTCCAGTTGTGTACAACAGTCAACAACCACAACAACTAGTTGCACCAGGCGCTCATCAACAGCTTAGTCAAAAGAGGGCTGCAGAAGGAGATGCGGGACTCTATAGTCAGCAGGGACATCCCAGTTACTATGACAACAGCAAACGACTGCGTTATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IY67	Ribonucleoprotein PTB-binding 1 OS=Homo sapiens OX=9606 GN=RAVER1 PE=1 SV=1
Q5XI28	Ribonucleoprotein PTB-binding 1 OS=Rattus norvegicus OX=10116 GN=Raver1 PE=1 SV=1
Q9CW46	Ribonucleoprotein PTB-binding 1 OS=Mus musculus OX=10090 GN=Raver1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005607 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR050502 all species →	Family	Eukaryotic RNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025 all species →	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14411	MSI; RNA-binding protein Musashi	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.