Detailed information of evm.model.Ap14.2032 in Astrangia poculata

Genomic Location: Ap14:22287177...22293047
NR annotation: XP_020607446.1, uncharacterized protein LOC110046114 isoform X2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3SZD5DDB1- and CUL4-associated factor 15 OS=Bos taurus OX=9913 GN=DCAF15 PE=2 SV=1
Q66K64DDB1- and CUL4-associated factor 15 OS=Homo sapiens OX=9606 GN=DCAF15 PE=1 SV=1
Q6PFH3DDB1- and CUL4-associated factor 15 OS=Mus musculus OX=10090 GN=Dcaf15 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006453 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14939
all species →		DCAF15_WD40DDB1-and CUL4-substrate receptor 15, WD repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR032734
all species →		DomainDDB1- and CUL4-associated factor 15, WD40 repeat-containing domainInterproscan
IPR038914
all species →		FamilyDDB1- and CUL4-associated factor 15Interproscan
IPR047319
all species →		DomainDDB1- and CUL4-associated factor 15, C-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR28541
all species →		DDB1- AND CUL4-ASSOCIATED FACTOR 15Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016567
all species →		Biological Processprotein ubiquitinationInterproscan
GO:0080008
all species →		Cellular ComponentCul4-RING E3 ubiquitin ligase complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap14.2032.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap14.2032 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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