Detailed information of evm.model.Ap14.215 in Astrangia poculata

Genomic Location: Ap14:2247864...2254513
NR annotation: XP_022807863.1, tetratricopeptide repeat protein 28-like [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q80XJ3Tetratricopeptide repeat protein 28 OS=Mus musculus OX=10090 GN=Ttc28 PE=1 SV=3
Q96AY4Tetratricopeptide repeat protein 28 OS=Homo sapiens OX=9606 GN=TTC28 PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009558 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12770
all species →		CHATCHAT domainDomainInterproscan
PF13424
all species →		TPR_12Tetratricopeptide repeatRepeatInterproscan
PF17874
all species →		TPR_MalTMalT-like TPR regionRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR024983
all species →		DomainCHAT domainInterproscan
IPR052699
all species →		FamilyRegulatory & Mitotic Spindle AssociatedInterproscan
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR019734
all species →		RepeatTetratricopeptide repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10098
all species →		RAPSYN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap14.215.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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