Detailed information of evm.model.Ap14.232.1.5f15dbea in Astrangia poculata

Genomic Location: Ap14:2442207...2448313
NR annotation: KAJ7378670.1, Ribosome biogenesis protein BRX1 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3SZZ0Ribosome biogenesis protein BRX1 homolog OS=Bos taurus OX=9913 GN=BRIX1 PE=2 SV=1
Q8TDN6Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens OX=9606 GN=BRIX1 PE=1 SV=2
Q4QQT6Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus OX=10116 GN=Brix1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004742 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04427
all species →		BrixBrix domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007109
all species →		DomainBrix domainInterproscan
IPR026532
all species →		FamilyRibosome biogenesis protein BRX1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13634
all species →		RIBOSOME BIOGENESIS PROTEIN BRIXInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006364
all species →		Biological ProcessrRNA processingInterproscan
GO:0019843
all species →		Molecular FunctionrRNA bindingInterproscan
GO:0000027
all species →		Biological Processribosomal large subunit assemblyInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14820BRX1, BRIX1; ribosome biogenesis protein BRX1-Ribosome biogenesisko03009deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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