Detailed information of evm.model.Ap14.257 in Astrangia poculata

Genomic Location: Ap14:2814050...2817557
NR annotation: KAJ7386581.1, Exosome RNA helicase MTR4 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9CZU3Exosome RNA helicase MTR4 OS=Mus musculus OX=10090 GN=Mtrex PE=1 SV=1
P42285Exosome RNA helicase MTR4 OS=Homo sapiens OX=9606 GN=MTREX PE=1 SV=3
O14232ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mtr4 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001225 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08148
all species →		DSHCTDSHCT (NUC185) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012961
all species →		DomainATP-dependent RNA helicase Ski2/MTR4, C-terminalInterproscan
IPR050699
all species →		FamilyRNA/DNA HelicaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12131
all species →		ATP-DEPENDENT RNA AND DNA HELICASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000460
all species →		Biological Processmaturation of 5.8S rRNAInterproscan
GO:0003724
all species →		Molecular FunctionRNA helicase activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006401
all species →		Biological ProcessRNA catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap14.257.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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