Detailed information of evm.model.Ap14.289 in Astrangia poculata

Genomic Location: Ap14:3025012...3026145
NR annotation: KAJ7386590.1, Phospholipid phosphatase 3 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O14495Phospholipid phosphatase 3 OS=Homo sapiens OX=9606 GN=PLPP3 PE=1 SV=1
Q99JY8Phospholipid phosphatase 3 OS=Mus musculus OX=10090 GN=Plpp3 PE=1 SV=1
P97544Phospholipid phosphatase 3 OS=Rattus norvegicus OX=10116 GN=Plpp3 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001178 (this species only)

 Pfam domain
No Pfam domain signature was detected for evm.model.Ap14.289. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR043216
all species →		FamilyPhosphatidate (PA) phosphatase-relatedInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10165
all species →		LIPID PHOSPHATE PHOSPHATASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005887
all species →		Cellular Componentplasma membraneInterproscan
GO:0006644
all species →		Biological Processphospholipid metabolic processInterproscan
GO:0007165
all species →		Biological Processsignal transductionInterproscan
GO:0008195
all species →		Molecular Functionphosphatidate phosphatase activityInterproscan
GO:0046839
all species →		Biological Processphospholipid dephosphorylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap14.289.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap14.289 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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