Detailed information of evm.model.Ap14.29 in Astrangia poculata

Genomic Location: Ap14:231121...250277
NR annotation: XP_020625308.1, uncharacterized protein LOC110062702 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P70490Lactadherin OS=Rattus norvegicus OX=10116 GN=Mfge8 PE=2 SV=1
Q95114Lactadherin OS=Bos taurus OX=9913 GN=MFGE8 PE=1 SV=2
P21956Lactadherin OS=Mus musculus OX=10090 GN=Mfge8 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000021 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13927
all species →		Ig_3Immunoglobulin domainDomainInterproscan
PF13895
all species →		Ig_2Immunoglobulin domainDomainInterproscan
PF15711
all species →		ILEIInterleukin-like EMT inducerDomainInterproscan
PF00754
all species →		F5_F8_type_CF5/8 type C domainDomainInterproscan
PF00431
all species →		CUBCUB domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000421
all species →		DomainCoagulation factor 5/8 C-terminal domainInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR000859
all species →		DomainCUB domainInterproscan
IPR036179
all species →		Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR035914
all species →		Homologous_superfamilySpermadhesin, CUB domain superfamilyInterproscan
IPR007110
all species →		DomainImmunoglobulin-like domainInterproscan
IPR003598
all species →		DomainImmunoglobulin subtype 2Interproscan
IPR008979
all species →		Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR003599
all species →		DomainImmunoglobulin subtypeInterproscan
IPR039477
all species →		DomainILEI/PANDER domainInterproscan
IPR050633
all species →		FamilyNeuropilin/Multicopper Oxidase/Coagulation FactorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46806
all species →		F5/8 TYPE C DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005887
all species →		Cellular Componentplasma membraneInterproscan
GO:0007411
all species →		Biological Processaxon guidanceInterproscan
GO:0017154
all species →		Molecular Functionsemaphorin receptor activityInterproscan
GO:0030424
all species →		Cellular ComponentaxonInterproscan
GO:0038023
all species →		Molecular Functionsignaling receptor activityInterproscan
GO:0098978
all species →		Cellular Componentglutamatergic synapseInterproscan
GO:0099055
all species →		Cellular Componentobsolete integral component of postsynaptic membraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap14.29.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap14.29 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP