Gene detail

Detailed information of evm.model.Ap14.298 in Astrangia poculata

Genomic Location: Ap14:3140226...3143669
NR annotation: XP_020611809.1, rhamnose-binding lectin-like isoform X3 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P86179	L-rhamnose-binding lectin CSL3 OS=Oncorhynchus keta OX=8018 PE=1 SV=1
P86177	L-rhamnose-binding lectin CSL1 OS=Oncorhynchus keta OX=8018 PE=1 SV=1
P86178	L-rhamnose-binding lectin CSL2 OS=Oncorhynchus keta OX=8018 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000356 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02140 all species →	Gal_Lectin	Galactose binding lectin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043159 all species →	Homologous_superfamily	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Interproscan
IPR000922 all species →	Domain	D-galactoside/L-rhamnose binding SUEL lectin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46780 all species →	PROTEIN EVA-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap14.298.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.