Gene detail

Detailed information of evm.model.Ap14.311 in Astrangia poculata

Genomic Location: Ap14:3235360...3258121
NR annotation: XP_020625685.1, RB1-inducible coiled-coil protein 1-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap14.311

atgttgcatgtgtttcatgtcgacctgggaacgatttacactttccaaatggaattggcaatggaaagtgtccaggtgctgatgagtacagtagcttctgtgactgggattcccgaggacaaacaagttctgttgatatctaatggtgaagcactggatccaacagagagagtgtgcagttacagtagtgctggaactgataccaaccctatctttctgttcagtaaatccaccattgaatcctctatccctccatcacccagcctcaacttgggatcagaagaaaatttaaaggagcaagttgataagtcctttaatttacctccgacatatgaaactcttgtatccagagctcagcttgcatctgacttccattcacttgcagtagaaattgcagaaagctgtgaaagtctagtttatgaacagaagcttcagcagaagggttgggcagcagttgtggctaacttggaaagtatcgcaagtgagtttgaagcaagatcaagcagtgttcatcaaatatattccgagttcctggattcaagaacaagatatatagagcttctggataggttcaaacagatgttaccactgttagccagggtacctgtgcttccatgtcttatgacaagacagctttccaaagataaacaacagagtgtggttagtcttctggactggataagcgcacaggacaacaagaacactcttcaagatatggtcaaacagtgtattgaggcagttgagcagtttgatgaatcacacctgactgagatcacagcagaagttagggaagttttagaatctcttgataacacaaacatgaaagagatcaaagggctggatgagagattagcaggactgcaacagatcctccagaatgtgcaaaccttgacacagtctcaagatgacatgtcaaagggttttcagcagaaccaggcccgagctcaaaatattggtgatccttcagtacttcctgatctgtgtgctagtcatcaaaagcagctcatgatgttgttaaagaatcactcacatttaagggaaataaggaaaaaatgtgcaagagcaaaggatgagctgtctgctaatcttcacaccagactaagatggatcatgtatgtcgagaagaaaatatgtgattgtgatggaaccatcataatgtaccatgaaaatatcagaagaatcaaacgaagattggaaattattgagcaagtgaatgaagcaccgcgtgtgtacatcttagctgttgcagaagttgtaaggagaagatcattttcttcacagtttcagaagtgggctagtaagctatgcgagagctcagtacaagcgagaacagaagaaactgcaaggagagaagaatttgagttgcatattggccagcattttttgcagagtttgtttagtggtttgtctgataggccatcgagatttgcggaaaagccccccagaccttttgacgaacagcttcccattataacagacagagatcttcaagaactgatggatcaaatcccagaattagcttcatatcttgaatctagctccatcaacatcagcatgaaagatgaaagtggaaaaactagtttcctgcaatcagaagaacttgaaaatcttagtagtgatactcacttccctgcaatttttgtaagaagaactagcgaaaatgtcacagacaagaaagtaacatcatcagtcacagacatgtcatcctctgagagcaaagctacacaaatgagtatggatgcttcaacgcaagttgagtggacttgtagtgagagtgataacattcccattcaagagtcgcaaggttctacagagttggactgtactaagaatgttccagatataaatgaacaagctaacttaattaggcatgagaccactgagggttcggatgaaaatgaatctaatgaaaggaaaaaaagtaatagtgacactgcatcagagaagagctcagcgcttgatgatagtgacttagttttccgatcagcgcatgaagactatgtgactgtttttgacgctgatttggcaggcgatcttgaggagaaggaacttcctcctgatatccaaccagtaggtgagattcaagaagactgtgctgcgcttcttgatgatgcaagccaaacaccaactctcgctagctctggtactcagagcactgatcacagcactcaaacagagtgcagttcggacagtagttggccagttcaagagactggcttggaggaatttggcgagaaaacaacacctgcgtcaagtcagcaaagctttgagacatctggtcaatctgtgacaaatgaaacggttaaaaaattagaacagctggaagagcaattaattactactcaagggtctttggaaaaagttaattctcaaaaagaaaaacttcaacaattgagcactaaggtgaaacattgtgttaagggcgagtttgaggttcttcgtcagtgtttaaatgatagtaaacaactgatcttagaatgggactcaaaaataaaagaggatgttttagcagctcttggtaatttacagcaaaaaggggatttgtttagggaacaaataatccaaaatgccactgaaagaactagaggagaatttcaaagagagctgatgcagttgaactctcagtttgaacaagagaaaagctcattccttgaaatgaaatctaaacttgagtttgagaagggtgaaattctaaatgagctaaaacaagtagaagccgaaaaagaaagaagtgaaactcaacacagagaggaaaatgaaaagttgagtctgattgtgagtgagtgtaaagctaaactggaagaacatgaaggtgcagcgcagaaagttcaagagagcaaatctcgctatgaagaagatcagcaaatcagattcaatgcaataatgatgaaactgaaaagagaaaaggagtatgctgtcttacaagcacaagaaaaaattaaggagttaaagcagctagtggagcaacaagagaatgatatgaaatccttattgatggaaaaagagagggtttcagaagattatgaacaggcacgtgatgccttctgtggacgcgaacaggagctactggcagttttgcaagagaaagaatccaaaattctagaagctgaaatccttatgcaaaacaaagaagcagagttcttagaacagatcgaacaggagaaagcatcaacattagctctgctgcaagttgaacgccaaatgtgggaagcagaaaggaacaaggacctagaagtcaaagtacaagaaactgagtgtgccactgatgcagtactagaggaagactatcaacaaaggattcagttcttggaagaggagaataggaaactgactgaacagttgtcaaaacaaactgctggggacagctctgatttgcaaggtggacagctgaaacgagctttggatgaaaaagatcaacagattaaaattcttcaacatcagcttagtcagatgcagcaattagctggagctactgctgcaacatcaaagatggataaaatctccctcagagactttcaaagtggtgacctgattcttctggtgtttgatgaaagatatgaaaactatcttgtgttaagtactggacagacattgttctttttacaccccgattccatggctggacttgatcttgcaacaagtggcccaaaaagacgaccatggatgttggcacagatgacagataaggaatactgtcaagctaaaaagccacacaacaggtttcatgttcctgtaggaacaaagttttacaggatacaagccaaaccctgtcagcgatga

Transcript

evm.model.Ap14.311

ATGTTGCATGTGTTTCATGTCGACCTGGGAACGATTTACACTTTCCAAATGGAATTGGCAATGGAAAGTGTCCAGGTGCTGATGAGTACAGTAGCTTCTGTGACTGGGATTCCCGAGGACAAACAAGTTCTGTTGATATCTAATGGTGAAGCACTGGATCCAACAGAGAGAGTGTGCAGTTACAGTAGTGCTGGAACTGATACCAACCCTATCTTTCTGTTCAGTAAATCCACCATTGAATCCTCTATCCCTCCATCACCCAGCCTCAACTTGGGATCAGAAGAAAATTTAAAGGAGCAAGTTGATAAGTCCTTTAATTTACCTCCGACATATGAAACTCTTGTATCCAGAGCTCAGCTTGCATCTGACTTCCATTCACTTGCAGTAGAAATTGCAGAAAGCTGTGAAAGTCTAGTTTATGAACAGAAGCTTCAGCAGAAGGGTTGGGCAGCAGTTGTGGCTAACTTGGAAAGTATCGCAAGTGAGTTTGAAGCAAGATCAAGCAGTGTTCATCAAATATATTCCGAGTTCCTGGATTCAAGAACAAGATATATAGAGCTTCTGGATAGGTTCAAACAGATGTTACCACTGTTAGCCAGGGTACCTGTGCTTCCATGTCTTATGACAAGACAGCTTTCCAAAGATAAACAACAGAGTGTGGTTAGTCTTCTGGACTGGATAAGCGCACAGGACAACAAGAACACTCTTCAAGATATGGTCAAACAGTGTATTGAGGCAGTTGAGCAGTTTGATGAATCACACCTGACTGAGATCACAGCAGAAGTTAGGGAAGTTTTAGAATCTCTTGATAACACAAACATGAAAGAGATCAAAGGGCTGGATGAGAGATTAGCAGGACTGCAACAGATCCTCCAGAATGTGCAAACCTTGACACAGTCTCAAGATGACATGTCAAAGGGTTTTCAGCAGAACCAGGCCCGAGCTCAAAATATTGGTGATCCTTCAGTACTTCCTGATCTGTGTGCTAGTCATCAAAAGCAGCTCATGATGTTGTTAAAGAATCACTCACATTTAAGGGAAATAAGGAAAAAATGTGCAAGAGCAAAGGATGAGCTGTCTGCTAATCTTCACACCAGACTAAGATGGATCATGTATGTCGAGAAGAAAATATGTGATTGTGATGGAACCATCATAATGTACCATGAAAATATCAGAAGAATCAAACGAAGATTGGAAATTATTGAGCAAGTGAATGAAGCACCGCGTGTGTACATCTTAGCTGTTGCAGAAGTTGTAAGGAGAAGATCATTTTCTTCACAGTTTCAGAAGTGGGCTAGTAAGCTATGCGAGAGCTCAGTACAAGCGAGAACAGAAGAAACTGCAAGGAGAGAAGAATTTGAGTTGCATATTGGCCAGCATTTTTTGCAGAGTTTGTTTAGTGGTTTGTCTGATAGGCCATCGAGATTTGCGGAAAAGCCCCCCAGACCTTTTGACGAACAGCTTCCCATTATAACAGACAGAGATCTTCAAGAACTGATGGATCAAATCCCAGAATTAGCTTCATATCTTGAATCTAGCTCCATCAACATCAGCATGAAAGATGAAAGTGGAAAAACTAGTTTCCTGCAATCAGAAGAACTTGAAAATCTTAGTAGTGATACTCACTTCCCTGCAATTTTTGTAAGAAGAACTAGCGAAAATGTCACAGACAAGAAAGTAACATCATCAGTCACAGACATGTCATCCTCTGAGAGCAAAGCTACACAAATGAGTATGGATGCTTCAACGCAAGTTGAGTGGACTTGTAGTGAGAGTGATAACATTCCCATTCAAGAGTCGCAAGGTTCTACAGAGTTGGACTGTACTAAGAATGTTCCAGATATAAATGAACAAGCTAACTTAATTAGGCATGAGACCACTGAGGGTTCGGATGAAAATGAATCTAATGAAAGGAAAAAAAGTAATAGTGACACTGCATCAGAGAAGAGCTCAGCGCTTGATGATAGTGACTTAGTTTTCCGATCAGCGCATGAAGACTATGTGACTGTTTTTGACGCTGATTTGGCAGGCGATCTTGAGGAGAAGGAACTTCCTCCTGATATCCAACCAGTAGGTGAGATTCAAGAAGACTGTGCTGCGCTTCTTGATGATGCAAGCCAAACACCAACTCTCGCTAGCTCTGGTACTCAGAGCACTGATCACAGCACTCAAACAGAGTGCAGTTCGGACAGTAGTTGGCCAGTTCAAGAGACTGGCTTGGAGGAATTTGGCGAGAAAACAACACCTGCGTCAAGTCAGCAAAGCTTTGAGACATCTGGTCAATCTGTGACAAATGAAACGGTTAAAAAATTAGAACAGCTGGAAGAGCAATTAATTACTACTCAAGGGTCTTTGGAAAAAGTTAATTCTCAAAAAGAAAAACTTCAACAATTGAGCACTAAGGTGAAACATTGTGTTAAGGGCGAGTTTGAGGTTCTTCGTCAGTGTTTAAATGATAGTAAACAACTGATCTTAGAATGGGACTCAAAAATAAAAGAGGATGTTTTAGCAGCTCTTGGTAATTTACAGCAAAAAGGGGATTTGTTTAGGGAACAAATAATCCAAAATGCCACTGAAAGAACTAGAGGAGAATTTCAAAGAGAGCTGATGCAGTTGAACTCTCAGTTTGAACAAGAGAAAAGCTCATTCCTTGAAATGAAATCTAAACTTGAGTTTGAGAAGGGTGAAATTCTAAATGAGCTAAAACAAGTAGAAGCCGAAAAAGAAAGAAGTGAAACTCAACACAGAGAGGAAAATGAAAAGTTGAGTCTGATTGTGAGTGAGTGTAAAGCTAAACTGGAAGAACATGAAGGTGCAGCGCAGAAAGTTCAAGAGAGCAAATCTCGCTATGAAGAAGATCAGCAAATCAGATTCAATGCAATAATGATGAAACTGAAAAGAGAAAAGGAGTATGCTGTCTTACAAGCACAAGAAAAAATTAAGGAGTTAAAGCAGCTAGTGGAGCAACAAGAGAATGATATGAAATCCTTATTGATGGAAAAAGAGAGGGTTTCAGAAGATTATGAACAGGCACGTGATGCCTTCTGTGGACGCGAACAGGAGCTACTGGCAGTTTTGCAAGAGAAAGAATCCAAAATTCTAGAAGCTGAAATCCTTATGCAAAACAAAGAAGCAGAGTTCTTAGAACAGATCGAACAGGAGAAAGCATCAACATTAGCTCTGCTGCAAGTTGAACGCCAAATGTGGGAAGCAGAAAGGAACAAGGACCTAGAAGTCAAAGTACAAGAAACTGAGTGTGCCACTGATGCAGTACTAGAGGAAGACTATCAACAAAGGATTCAGTTCTTGGAAGAGGAGAATAGGAAACTGACTGAACAGTTGTCAAAACAAACTGCTGGGGACAGCTCTGATTTGCAAGGTGGACAGCTGAAACGAGCTTTGGATGAAAAAGATCAACAGATTAAAATTCTTCAACATCAGCTTAGTCAGATGCAGCAATTAGCTGGAGCTACTGCTGCAACATCAAAGATGGATAAAATCTCCCTCAGAGACTTTCAAAGTGGTGACCTGATTCTTCTGGTGTTTGATGAAAGATATGAAAACTATCTTGTGTTAAGTACTGGACAGACATTGTTCTTTTTACACCCCGATTCCATGGCTGGACTTGATCTTGCAACAAGTGGCCCAAAAAGACGACCATGGATGTTGGCACAGATGACAGATAAGGAATACTGTCAAGCTAAAAAGCCACACAACAGGTTTCATGTTCCTGTAGGAACAAAGTTTTACAGGATACAAGCCAAACCCTGTCAGCGATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TDY2	RB1-inducible coiled-coil protein 1 OS=Homo sapiens OX=9606 GN=RB1CC1 PE=1 SV=3
Q9ESK9	RB1-inducible coiled-coil protein 1 OS=Mus musculus OX=10090 GN=Rb1cc1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004237 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04108 all species →	ATG17_like	Autophagy protein ATG17-like domain	Domain	Interproscan
PF10377 all species →	ATG11	Autophagy-related protein 11	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045326 all species →	Domain	Autophagy protein ATG17-like domain	Interproscan
IPR019460 all species →	Domain	Autophagy-related protein 11, C-terminal	Interproscan
IPR040040 all species →	Family	Autophagy-related protein 11	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13222 all species →	RB1-INDUCIBLE COILED-COIL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000045 all species →	Biological Process	autophagosome assembly	Interproscan
GO:0000422 all species →	Biological Process	autophagy of mitochondrion	Interproscan
GO:0001934 all species →	Biological Process	positive regulation of protein phosphorylation	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0030242 all species →	Biological Process	autophagy of peroxisome	Interproscan
GO:0034045 all species →	Cellular Component	phagophore assembly site membrane	Interproscan
GO:0034727 all species →	Biological Process	piecemeal microautophagy of the nucleus	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan
GO:0061709 all species →	Biological Process	reticulophagy	Interproscan
GO:0061723 all species →	Biological Process	glycophagy	Interproscan
GO:1990316 all species →	Cellular Component	Atg1/ULK1 kinase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17589	RB1CC1; RB1-inducible coiled-coil protein 1	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.