Genomic Location: Ap14:3261922...3267171
NR annotation: XP_020625684.1, sodium leak channel non-selective protein-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap14.313 |
| Transcript |
| evm.model.Ap14.313 |
| Protein |
| evm.model.Ap14.313 |
| UniProt accession | Description |
|---|---|
| Q8IZF0 | Sodium leak channel NALCN OS=Homo sapiens OX=9606 GN=NALCN PE=1 SV=1 |
| Q8BXR5 | Sodium leak channel NALCN OS=Mus musculus OX=10090 GN=Nalcn PE=1 SV=2 |
| Q6Q760 | Sodium leak channel NALCN OS=Rattus norvegicus OX=10116 GN=Nalcn PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007069 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00520 all species → | Ion_trans | Ion transport protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027359 all species → | Homologous_superfamily | Voltage-dependent channel domain superfamily | Interproscan |
| IPR005821 all species → | Domain | Ion transport domain | Interproscan |
| IPR028823 all species → | Family | Sodium leak channel NALCN | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46141 all species → | SODIUM LEAK CHANNEL NON-SELECTIVE PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005216 all species → | Molecular Function | monoatomic ion channel activity | Interproscan |
| GO:0006811 all species → | Biological Process | monoatomic ion transport | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| GO:0005261 all species → | Molecular Function | monoatomic cation channel activity | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0032224 all species → | Biological Process | positive regulation of synaptic transmission, cholinergic | Interproscan |
| GO:0032230 all species → | Biological Process | positive regulation of synaptic transmission, GABAergic | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K21863 | NALCN; sodium leak channel non-selective protein | - | Ion channels | ko04040 | deepkoala |
Transcript abundance of evm.model.Ap14.313 across 49 RNA-seq samples of Astrangia poculata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 1 | 5.12 | 71.67 | |
| whole organism · heat control | 12 | 2 | 15.05 | 109.59 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.