Detailed information of evm.model.Ap14.313 in Astrangia poculata

Genomic Location: Ap14:3261922...3267171
NR annotation: XP_020625684.1, sodium leak channel non-selective protein-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8IZF0Sodium leak channel NALCN OS=Homo sapiens OX=9606 GN=NALCN PE=1 SV=1
Q8BXR5Sodium leak channel NALCN OS=Mus musculus OX=10090 GN=Nalcn PE=1 SV=2
Q6Q760Sodium leak channel NALCN OS=Rattus norvegicus OX=10116 GN=Nalcn PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007069 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00520
all species →
Ion_transIon transport proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027359
all species →
Homologous_superfamilyVoltage-dependent channel domain superfamilyInterproscan
IPR005821
all species →
DomainIon transport domainInterproscan
IPR028823
all species →
FamilySodium leak channel NALCNInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46141
all species →
SODIUM LEAK CHANNEL NON-SELECTIVE PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005216
all species →
Molecular Functionmonoatomic ion channel activityInterproscan
GO:0006811
all species →
Biological Processmonoatomic ion transportInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0055085
all species →
Biological Processtransmembrane transportInterproscan
GO:0005261
all species →
Molecular Functionmonoatomic cation channel activityInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0032224
all species →
Biological Processpositive regulation of synaptic transmission, cholinergicInterproscan
GO:0032230
all species →
Biological Processpositive regulation of synaptic transmission, GABAergicInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K21863NALCN; sodium leak channel non-selective protein-Ion channelsko04040deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap14.313 across 49 RNA-seq samples of Astrangia poculata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
3TPM > 0
4Conditions
109.6Max TPM
5.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 1 5.12 71.67
whole organism · heat control 12 2 15.05 109.59
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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