Detailed information of evm.model.Ap14.338 in Astrangia poculata

Genomic Location: Ap14:3474259...3481569
NR annotation: KAJ7386622.1, hypothetical protein OS493_008773 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7T3H9Putative hydroxypyruvate isomerase OS=Danio rerio OX=7955 GN=hyi PE=2 SV=2
Q6CZ232-oxo-tetronate isomerase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=otnI PE=1 SV=1
Q5T013Putative hydroxypyruvate isomerase OS=Homo sapiens OX=9606 GN=HYI PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003862 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01261
all species →		AP_endonuc_2Xylose isomerase-like TIM barrelDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036237
all species →		Homologous_superfamilyXylose isomerase-like superfamilyInterproscan
IPR026040
all species →		FamilyHydroxypyruvate isomerase-likeInterproscan
IPR050417
all species →		FamilySugar Epimerase/IsomeraseInterproscan
IPR013022
all species →		DomainXylose isomerase-like, TIM barrel domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43489
all species →		ISOMERASEInterproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.Ap14.338. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01816hyi, gip; hydroxypyruvate isomeraseEC:5.3.1.22
Glyoxylate and dicarboxylate metabolismko00630deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap14.338 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP