Gene detail

Detailed information of evm.model.Ap14.388 in Astrangia poculata

Genomic Location: Ap14:4118070...4120077
NR annotation: XP_027046427.1, transcription elongation factor 1 homolog [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8MQI6	Transcription elongation factor 1 homolog OS=Drosophila melanogaster OX=7227 GN=CG40228 PE=3 SV=1
A4IFR3	Transcription elongation factor 1 homolog OS=Bos taurus OX=9913 GN=ELOF1 PE=3 SV=1
P60002	Transcription elongation factor 1 homolog OS=Homo sapiens OX=9606 GN=ELOF1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010969 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05129 all species →	Elf1	Transcription elongation factor Elf1 like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038567 all species →	Homologous_superfamily	Transcription elongation factor 1 superfamily	Interproscan
IPR007808 all species →	Family	Transcription elongation factor 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20934 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000993 all species →	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0008023 all species →	Cellular Component	transcription elongation factor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25829	ELOF1, ELF1; transcription elongation factor 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.