Gene detail

Detailed information of evm.model.Ap14.472 in Astrangia poculata

Genomic Location: Ap14:4986803...5016311
NR annotation: XP_027051715.1, structural maintenance of chromosomes protein 2-like [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap14.472

atgtacatcaaacaggtagttattgatggcttcaagtcgtatgcaacacggacaactgtttctgggttcgatccgcagtttaatgcgatcactggcttgaacggcagcggcaaatcgaatatacttgactcgatttgtttcttgcttggaatttcgaacttatctcaggtacgagcaagcagtttgcaggaactagtgtacaaaagtggacaggcaggcgtaactaaagccactgtgacaatcacgtttgacaacacagacaaaaagcaaagtcctttaggatatgaatcatttgaggaaattacagtatctcggcaggttgttattgaaggtcggaacaaatacctaatcaatggatgtaatgctaacaacaccagagtacaagacttgtttcgttcagttcagctaaatgtcaacaaccctcactttcttatcatgcagggcagaatcaccaaagtactaaacatgaaaccaccagaaattctgtcaatgattgaagaagcagcaggcacaagaatgtatgaaagcaaaaagcagtctgtgcagcgaaccattgagaaaaaggacagcaaactgcaagagattgaaacaattcttactgaagaaataactccaacccttactaaactaaaagaggaaagagcttcttatcttgaataccaaaaggtcatgagagaagtggagcacctctcaagactgtacatcgcacaccagtttgtgatggctgaggatgtacagaaaaagtctggagttgaactggagaatattaaacaggagaatgtgaaacttcgtgaaaagttagaggagattgaagggaagattaaagaaatcagtgcagtcatttctaaattggagaagaaaaggagtgctgaatcaggctcagccttaaaagaactagaaaagaaatttgatgaggtttcaaaggttgatgttaaggcaaattctgatttgaaacacgtgaaagataccctagctgatgagaagaaaaagaagaaaaaacttacaaaaaaccttgatgatgaccaatctcaacttaaaaacaaagaaaaagaactaaagaagttgagtgatcttctcgtcaagttagaggagaaaagtcaagcagacagcaaagcagtgaaagtggcacaggatcatttccatgctgtgtcagcaggattatccagtaatgaaggtggcgaggacaaaaccctcgcagaccaaatcatgacttgtaagaatgaaatcagctctgctgaaactgaatctaaacaagcccagatgaaacttaaacatgctcagtcagaactaaagaaaaaacaatctgagctgaaaaacacggaaaaaagttacaagaaggacaaggatgtttatgatgccattgaaaagagtaaatccaaacttgaggatgaaatgaagatacttaaatacgaagaaggaaaagaggaaaaactaacagccaaaaggagagagcttgaagctgaagtttcagcactgaggacaaaagtggagactcttgaagctaaatttccaaaccttcagtttgattacagggatccagagacagggtttaacagaagcaaggtcaaaggtcttgttgctcaattgatacatgtcaaagatgtggcaactgccactggtctggaggtgacagctggagggaagctctataatgttgtggtggacacagaagtcactggtaaaaagttgattagcaatggcaagctcaagcgccggtacacctttatccctttgaataaaattgctgcaagaaccctctcaaatgatgttgtgaaaagagctgagagcttggttggtaaggacaatgtcagtctcgctctgtctcttgttggttatgatgaagaagtcaaggcagccatggcttacgtgtttggaactacctttgtgtgtgatggcatggacatagccaaaaaggtcacctatgatcccaaagtacaggcaaggacagttacattaggtggagacctgtttgatcctcagggaacagctacaggaggtgctcgatcatcgcattcctccatcctggtcaagttacaagaattaaacggagcacaagccacactgcaagagaagagcacagagttacaaagtgttatcaaggagctggatacttgtaagaaagtggcagaaaaatttcgtcagataaaacaacagtacgacctaaaagttcatgaagctgagcttgtccaggctcgtctgaaacaaagcactcaccaccatcaactggaggacgtggaggccttgcaaaaaacagttgaggaacagcaagggttaatatccaaggcgaaggaaacaatagcagctgcaactgagaaatgcaaagatgttgaaaacaagatgaaggaagcaaagtctcatcgtgagaaggaactgaaaacagcagaggaagaagtgaagaaaagcaagaagaaagctgaagagtcaacgaaaaccatgaaagcaaaacaacaggaagtcgaagagatgaaattagaaatggaggaagtgaagaatgagatgtctaatgtggaccaacaattaaaggcaattgatgatgctatttccaaagcagaggagcaagtggaaaaatttacggagaaagcaaaggaaactaagaaagcggtccaagaggcagctgaggaactgaataaacagaaagaaactcttaaggcgtgcaatgaggccatcagtgagaaagttaatgagcagcgagacctgcagaaacaaggtcaggatattcagcttgagctgaaagaaatcgatcataaagttaacaagtttcaacgagacagcagagatgccgctacaaaggttgagcaaatgttggaacagtacgattggatttccaacgagaagcaatttttcgggcagcccaacactgcttacgattttgccgccaacgacatgaaggaggtctccagacggctcagcaaactgcaagaaaccaaggagaaactgggcaagaacgtaaacatgagggctatgaacatgctgggaaaagctgaagagaagtacaacgatcttatgaaaaagaaacgaattgtcctgaatgacaaagataagattgcatcggtcatcaaagaacttgacgaaaagaaaaatgaagcactgagaaacgcttggaagaaagtcaacaaggactttggttcgatattttccactctccttcctgggaccactgccaagctggcacctcctgaaggacaaacggaacttgacgggctggaagtgaaagttgctttcggaaatgtatggaaagagagtcttagtgaactcagtggtggtcaaaggtctttggtcgcattgtccctcatcctttccatgttgctcttcaaacccgctcctctgtacatcctagatgaggtagacgccgctctagacctgtcgcacacccaaaacatcggccagatgcttagagctcatttcaagcattcccagttcattgtggtgtctcttaaagacggcatgtttaacaatgccaatgtgctcttcaaaaccaaatttgtcgatggtgtctccacggtcacgcgatatgctcagtcccagccctctcgggatggagatggcggcggagcaattggacggggagggaaaagcactgtaaagaaaaaccctaacaagaggcagagagctgacgctccttcccagcctctcacgccatcgcaaggttaa

Transcript

evm.model.Ap14.472

ATGTACATCAAACAGGTAGTTATTGATGGCTTCAAGTCGTATGCAACACGGACAACTGTTTCTGGGTTCGATCCGCAGTTTAATGCGATCACTGGCTTGAACGGCAGCGGCAAATCGAATATACTTGACTCGATTTGTTTCTTGCTTGGAATTTCGAACTTATCTCAGGTACGAGCAAGCAGTTTGCAGGAACTAGTGTACAAAAGTGGACAGGCAGGCGTAACTAAAGCCACTGTGACAATCACGTTTGACAACACAGACAAAAAGCAAAGTCCTTTAGGATATGAATCATTTGAGGAAATTACAGTATCTCGGCAGGTTGTTATTGAAGGTCGGAACAAATACCTAATCAATGGATGTAATGCTAACAACACCAGAGTACAAGACTTGTTTCGTTCAGTTCAGCTAAATGTCAACAACCCTCACTTTCTTATCATGCAGGGCAGAATCACCAAAGTACTAAACATGAAACCACCAGAAATTCTGTCAATGATTGAAGAAGCAGCAGGCACAAGAATGTATGAAAGCAAAAAGCAGTCTGTGCAGCGAACCATTGAGAAAAAGGACAGCAAACTGCAAGAGATTGAAACAATTCTTACTGAAGAAATAACTCCAACCCTTACTAAACTAAAAGAGGAAAGAGCTTCTTATCTTGAATACCAAAAGGTCATGAGAGAAGTGGAGCACCTCTCAAGACTGTACATCGCACACCAGTTTGTGATGGCTGAGGATGTACAGAAAAAGTCTGGAGTTGAACTGGAGAATATTAAACAGGAGAATGTGAAACTTCGTGAAAAGTTAGAGGAGATTGAAGGGAAGATTAAAGAAATCAGTGCAGTCATTTCTAAATTGGAGAAGAAAAGGAGTGCTGAATCAGGCTCAGCCTTAAAAGAACTAGAAAAGAAATTTGATGAGGTTTCAAAGGTTGATGTTAAGGCAAATTCTGATTTGAAACACGTGAAAGATACCCTAGCTGATGAGAAGAAAAAGAAGAAAAAACTTACAAAAAACCTTGATGATGACCAATCTCAACTTAAAAACAAAGAAAAAGAACTAAAGAAGTTGAGTGATCTTCTCGTCAAGTTAGAGGAGAAAAGTCAAGCAGACAGCAAAGCAGTGAAAGTGGCACAGGATCATTTCCATGCTGTGTCAGCAGGATTATCCAGTAATGAAGGTGGCGAGGACAAAACCCTCGCAGACCAAATCATGACTTGTAAGAATGAAATCAGCTCTGCTGAAACTGAATCTAAACAAGCCCAGATGAAACTTAAACATGCTCAGTCAGAACTAAAGAAAAAACAATCTGAGCTGAAAAACACGGAAAAAAGTTACAAGAAGGACAAGGATGTTTATGATGCCATTGAAAAGAGTAAATCCAAACTTGAGGATGAAATGAAGATACTTAAATACGAAGAAGGAAAAGAGGAAAAACTAACAGCCAAAAGGAGAGAGCTTGAAGCTGAAGTTTCAGCACTGAGGACAAAAGTGGAGACTCTTGAAGCTAAATTTCCAAACCTTCAGTTTGATTACAGGGATCCAGAGACAGGGTTTAACAGAAGCAAGGTCAAAGGTCTTGTTGCTCAATTGATACATGTCAAAGATGTGGCAACTGCCACTGGTCTGGAGGTGACAGCTGGAGGGAAGCTCTATAATGTTGTGGTGGACACAGAAGTCACTGGTAAAAAGTTGATTAGCAATGGCAAGCTCAAGCGCCGGTACACCTTTATCCCTTTGAATAAAATTGCTGCAAGAACCCTCTCAAATGATGTTGTGAAAAGAGCTGAGAGCTTGGTTGGTAAGGACAATGTCAGTCTCGCTCTGTCTCTTGTTGGTTATGATGAAGAAGTCAAGGCAGCCATGGCTTACGTGTTTGGAACTACCTTTGTGTGTGATGGCATGGACATAGCCAAAAAGGTCACCTATGATCCCAAAGTACAGGCAAGGACAGTTACATTAGGTGGAGACCTGTTTGATCCTCAGGGAACAGCTACAGGAGGTGCTCGATCATCGCATTCCTCCATCCTGGTCAAGTTACAAGAATTAAACGGAGCACAAGCCACACTGCAAGAGAAGAGCACAGAGTTACAAAGTGTTATCAAGGAGCTGGATACTTGTAAGAAAGTGGCAGAAAAATTTCGTCAGATAAAACAACAGTACGACCTAAAAGTTCATGAAGCTGAGCTTGTCCAGGCTCGTCTGAAACAAAGCACTCACCACCATCAACTGGAGGACGTGGAGGCCTTGCAAAAAACAGTTGAGGAACAGCAAGGGTTAATATCCAAGGCGAAGGAAACAATAGCAGCTGCAACTGAGAAATGCAAAGATGTTGAAAACAAGATGAAGGAAGCAAAGTCTCATCGTGAGAAGGAACTGAAAACAGCAGAGGAAGAAGTGAAGAAAAGCAAGAAGAAAGCTGAAGAGTCAACGAAAACCATGAAAGCAAAACAACAGGAAGTCGAAGAGATGAAATTAGAAATGGAGGAAGTGAAGAATGAGATGTCTAATGTGGACCAACAATTAAAGGCAATTGATGATGCTATTTCCAAAGCAGAGGAGCAAGTGGAAAAATTTACGGAGAAAGCAAAGGAAACTAAGAAAGCGGTCCAAGAGGCAGCTGAGGAACTGAATAAACAGAAAGAAACTCTTAAGGCGTGCAATGAGGCCATCAGTGAGAAAGTTAATGAGCAGCGAGACCTGCAGAAACAAGGTCAGGATATTCAGCTTGAGCTGAAAGAAATCGATCATAAAGTTAACAAGTTTCAACGAGACAGCAGAGATGCCGCTACAAAGGTTGAGCAAATGTTGGAACAGTACGATTGGATTTCCAACGAGAAGCAATTTTTCGGGCAGCCCAACACTGCTTACGATTTTGCCGCCAACGACATGAAGGAGGTCTCCAGACGGCTCAGCAAACTGCAAGAAACCAAGGAGAAACTGGGCAAGAACGTAAACATGAGGGCTATGAACATGCTGGGAAAAGCTGAAGAGAAGTACAACGATCTTATGAAAAAGAAACGAATTGTCCTGAATGACAAAGATAAGATTGCATCGGTCATCAAAGAACTTGACGAAAAGAAAAATGAAGCACTGAGAAACGCTTGGAAGAAAGTCAACAAGGACTTTGGTTCGATATTTTCCACTCTCCTTCCTGGGACCACTGCCAAGCTGGCACCTCCTGAAGGACAAACGGAACTTGACGGGCTGGAAGTGAAAGTTGCTTTCGGAAATGTATGGAAAGAGAGTCTTAGTGAACTCAGTGGTGGTCAAAGGTCTTTGGTCGCATTGTCCCTCATCCTTTCCATGTTGCTCTTCAAACCCGCTCCTCTGTACATCCTAGATGAGGTAGACGCCGCTCTAGACCTGTCGCACACCCAAAACATCGGCCAGATGCTTAGAGCTCATTTCAAGCATTCCCAGTTCATTGTGGTGTCTCTTAAAGACGGCATGTTTAACAATGCCAATGTGCTCTTCAAAACCAAATTTGTCGATGGTGTCTCCACGGTCACGCGATATGCTCAGTCCCAGCCCTCTCGGGATGGAGATGGCGGCGGAGCAATTGGACGGGGAGGGAAAAGCACTGTAAAGAAAAACCCTAACAAGAGGCAGAGAGCTGACGCTCCTTCCCAGCCTCTCACGCCATCGCAAGGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95347	Structural maintenance of chromosomes protein 2 OS=Homo sapiens OX=9606 GN=SMC2 PE=1 SV=2
Q90988	Structural maintenance of chromosomes protein 2 OS=Gallus gallus OX=9031 GN=SMC2 PE=2 SV=1
Q8CG48	Structural maintenance of chromosomes protein 2 OS=Mus musculus OX=10090 GN=Smc2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004136 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06470 all species →	SMC_hinge	SMC proteins Flexible Hinge Domain	Domain	Interproscan
PF02463 all species →	SMC_N	RecF/RecN/SMC N terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024704 all species →	Family	Structural maintenance of chromosomes protein	Interproscan
IPR027120 all species →	Domain	Smc2, ATP-binding cassette domain	Interproscan
IPR010935 all species →	Domain	SMCs flexible hinge	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003395 all species →	Domain	RecF/RecN/SMC, N-terminal	Interproscan
IPR036277 all species →	Homologous_superfamily	SMCs flexible hinge superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43977 all species →	STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0051276 all species →	Biological Process	chromosome organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06674	SMC2; structural maintenance of chromosome 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.