Gene detail

Detailed information of evm.model.Ap14.739 in Astrangia poculata

Genomic Location: Ap14:7978575...7979123
NR annotation: KAJ7358783.1, Small subunit (SSU) processome component [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q921Y2	U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus OX=10090 GN=Imp3 PE=2 SV=1
Q9NV31	U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens OX=9606 GN=IMP3 PE=1 SV=1
Q3T0M3	U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus OX=9913 GN=IMP3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008343 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00163 all species →	Ribosomal_S4	Ribosomal protein S4/S9 N-terminal domain	Family	Interproscan
PF01479 all species →	S4	S4 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001912 all species →	Domain	Small ribosomal subunit protein uS4, N-terminal	Interproscan
IPR002942 all species →	Domain	RNA-binding S4 domain	Interproscan
IPR036986 all species →	Homologous_superfamily	RNA-binding S4 domain superfamily	Interproscan
IPR022801 all species →	Family	Small ribosomal subunit protein uS4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11831 all species →	30S 40S RIBOSOMAL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0030515 all species →	Molecular Function	snoRNA binding	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0034457 all species →	Cellular Component	Mpp10 complex	Interproscan
GO:0042274 all species →	Biological Process	ribosomal small subunit biogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14560	IMP3; U3 small nucleolar ribonucleoprotein protein IMP3	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.