Gene detail

Detailed information of evm.model.Ap14.749 in Astrangia poculata

Genomic Location: Ap14:8051247...8066000
NR annotation: XP_020627226.1, RNA exonuclease 1 homolog [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap14.749

atgtcgaaatcatcaagactgaaagcttcaaagagcaaaatctcaccacataaacataaaactgaactagaacagcacactgttaataaaactaaaacatcaagtcaagaaggttatgttgaggacaatttaccagctgcagttaaaatcactaaaccagatgacaaaacaagaaagtcacaatcagttcaggatactggccacattaatgaagacaaatactcaacatccacaactgctgttaaaggtattctcaaaagaacaaatgaggagctatgtgtcaatgatcaaaagtgtagtgtaaaggaatcttcgcctgtggacagcttagaacaaaggaaagttgtaactagcttggatgtgacaactgaaagtcacgtagagatgtttggtgaagatgacactgagcaaccgtttgcttctcttactgatgaggagaaaaaaattattggattatcagcatttccaccaagtggaagcagtcaaagtgatttggctactattaaatgtacagatttgtcttcagcatcagatctttccactgtctcaagtactcatggtcatacttctgccttgacaacatcatctgaaaataaaacagaagataaaggtgttatgagcagtaaccatggttatgttgaaacagcggctgttcgtaaagtggtaaaactggaacagcttgagatggatggttcaaatgaaagattgacagtgaatgagataaatgaaatgccaacaaactccagatttgactgtataaatgagaaacacgaccttactgtcattaaggataaatctggtaaatccgacaaatcaagaaaaagaaaatctgttcaacttcaaatttcaagtgaaggatgtcaagataagacaccttcaatagatgttattgctgcaaagaaaaggaaatcacaacaactgccatgtgttgctagtcgtactaatgactcttctgcagtgaagggcgaggaaggtagcaaagctattaaaggaaatgaaagttccatcaatcaagaaagtacattacaacaattttttatgtcgacgtcaaagtcacctaaagatactgaacgttctagaaaagcaatgcctaatgctgtttccccagatgtaaagaaacacaaagctgtttttgacagtcctgctaaattaaaagaaaaatctcctgttaagaacataactaaagaaagtgtttatcatatacctaagaaaaaagtcgtgtctgagactgaaattagtttctttggtccaagtaaaaagattcaaaaaactgacaaagcagaaaagcccaagaaaaacaaagaaaaaacaactccagttaagactttaaaacccaaaatagagagaagaggattagaaaagagcaggttacagaaaacagaaccaaaaacaaccatgccgattactatattgtcaagtgatgacagtgatatgtgtagcccagataactgggattcgagcactgatgaacaaaattccctaaagaggatttgggatgattttgaattgccgcaaaatgacaatgtattggaagaggatttccaatcacctgttaagaagcaggctgtgcaagatttgtctaggaagagagcaccatcaacttcaaaggagagtggcacagaaaaacaaccgtcattggtgaatgcgttaggactggggaaaaagcagcgtgttgctcattcatccggtcatttgcctaggcgattatcatcaaatgccaatccagtaaggaggtaccccaagaccctgtcagctatacagaagaaagatgagtctgcagcacaaaaagaaagttcggaatcacctgtcaaaactgaagtgaggtacaagccagcaaaacaaagggtggcccatgtcctaaagaacaaaaccccagcaggatccttgccaagaccgaggatccccgtggagtatggtgctaaggtgccccaaagtcagcgccaaaggtacctggacaggattgtggatgagtaccttagaatatgctccactcagaaagaagcatttgaaaaggctgtagaggaagagaaagcattgtatgaaagaagcacaaggcgacaggtctacttgaatctctgtgtgaacgcaatcaagaaacttcgagatacgatacagctggagttaccatcaccagtcaagacagagactgcaacacgtgtcgctgtcaccaagacactgtcgtcaggggcagttcttatcagcacaaagagtcctgtcaaacaggacaaacctgctcttccagcaactgatcaacttacagaagaggtgatgtatgattttctgtccaagtacctgatgagtgaagatgatctagttgagaatggctatccacgaccctgtccgacatcaccaggaaaggctgttatcaaaactagaaaggagcaaccttccaaagactccttgcggaggatttgttgccgctgtggcaagccttttagggtgcttgaggatggaaattacttaacaagagaagaatgtgtataccatgctggaaaactcttccgaaaaagaggagaacctatcacaaattattcctgctgtcaaggagatgcggggagtcctggctgctgtgttggaaaggttcatgtgagtgataatgtttacaacactgatggctttatgacgaccatagtgagtccactgacagaccaacgaaagaagatcttttccatggactgcgaaatggccagatggaccactaggtttgaacccagacacctttaccttatggaggttttgttcagtggagtaacagaagagtcattgcgtggtgtgaccacaaacatacatgaagtacaagcagtacttttgagcatgattcacagagacactatactggttggacatagcttggagagtgacctcaaagcaaccaagttaatccatagtaaagtggtagatacttctgtggtatttccccaccgactgggccctccctacaagagagcacttcgtaacctcatggcagaacatctgaagaagattattcaggatagcgttgatggccatgacagtcatgaggatgcagcagcatgcttagaactgatgagatggagggtgaaagaagacatgaagaaaacagcaagacacaggtcgccacgtcattcactctcctaa

Transcript

evm.model.Ap14.749

ATGTCGAAATCATCAAGACTGAAAGCTTCAAAGAGCAAAATCTCACCACATAAACATAAAACTGAACTAGAACAGCACACTGTTAATAAAACTAAAACATCAAGTCAAGAAGGTTATGTTGAGGACAATTTACCAGCTGCAGTTAAAATCACTAAACCAGATGACAAAACAAGAAAGTCACAATCAGTTCAGGATACTGGCCACATTAATGAAGACAAATACTCAACATCCACAACTGCTGTTAAAGGTATTCTCAAAAGAACAAATGAGGAGCTATGTGTCAATGATCAAAAGTGTAGTGTAAAGGAATCTTCGCCTGTGGACAGCTTAGAACAAAGGAAAGTTGTAACTAGCTTGGATGTGACAACTGAAAGTCACGTAGAGATGTTTGGTGAAGATGACACTGAGCAACCGTTTGCTTCTCTTACTGATGAGGAGAAAAAAATTATTGGATTATCAGCATTTCCACCAAGTGGAAGCAGTCAAAGTGATTTGGCTACTATTAAATGTACAGATTTGTCTTCAGCATCAGATCTTTCCACTGTCTCAAGTACTCATGGTCATACTTCTGCCTTGACAACATCATCTGAAAATAAAACAGAAGATAAAGGTGTTATGAGCAGTAACCATGGTTATGTTGAAACAGCGGCTGTTCGTAAAGTGGTAAAACTGGAACAGCTTGAGATGGATGGTTCAAATGAAAGATTGACAGTGAATGAGATAAATGAAATGCCAACAAACTCCAGATTTGACTGTATAAATGAGAAACACGACCTTACTGTCATTAAGGATAAATCTGGTAAATCCGACAAATCAAGAAAAAGAAAATCTGTTCAACTTCAAATTTCAAGTGAAGGATGTCAAGATAAGACACCTTCAATAGATGTTATTGCTGCAAAGAAAAGGAAATCACAACAACTGCCATGTGTTGCTAGTCGTACTAATGACTCTTCTGCAGTGAAGGGCGAGGAAGGTAGCAAAGCTATTAAAGGAAATGAAAGTTCCATCAATCAAGAAAGTACATTACAACAATTTTTTATGTCGACGTCAAAGTCACCTAAAGATACTGAACGTTCTAGAAAAGCAATGCCTAATGCTGTTTCCCCAGATGTAAAGAAACACAAAGCTGTTTTTGACAGTCCTGCTAAATTAAAAGAAAAATCTCCTGTTAAGAACATAACTAAAGAAAGTGTTTATCATATACCTAAGAAAAAAGTCGTGTCTGAGACTGAAATTAGTTTCTTTGGTCCAAGTAAAAAGATTCAAAAAACTGACAAAGCAGAAAAGCCCAAGAAAAACAAAGAAAAAACAACTCCAGTTAAGACTTTAAAACCCAAAATAGAGAGAAGAGGATTAGAAAAGAGCAGGTTACAGAAAACAGAACCAAAAACAACCATGCCGATTACTATATTGTCAAGTGATGACAGTGATATGTGTAGCCCAGATAACTGGGATTCGAGCACTGATGAACAAAATTCCCTAAAGAGGATTTGGGATGATTTTGAATTGCCGCAAAATGACAATGTATTGGAAGAGGATTTCCAATCACCTGTTAAGAAGCAGGCTGTGCAAGATTTGTCTAGGAAGAGAGCACCATCAACTTCAAAGGAGAGTGGCACAGAAAAACAACCGTCATTGGTGAATGCGTTAGGACTGGGGAAAAAGCAGCGTGTTGCTCATTCATCCGGTCATTTGCCTAGGCGATTATCATCAAATGCCAATCCAGTAAGGAGGTACCCCAAGACCCTGTCAGCTATACAGAAGAAAGATGAGTCTGCAGCACAAAAAGAAAGTTCGGAATCACCTGTCAAAACTGAAGTGAGGTACAAGCCAGCAAAACAAAGGGTGGCCCATGTCCTAAAGAACAAAACCCCAGCAGGATCCTTGCCAAGACCGAGGATCCCCGTGGAGTATGGTGCTAAGGTGCCCCAAAGTCAGCGCCAAAGGTACCTGGACAGGATTGTGGATGAGTACCTTAGAATATGCTCCACTCAGAAAGAAGCATTTGAAAAGGCTGTAGAGGAAGAGAAAGCATTGTATGAAAGAAGCACAAGGCGACAGGTCTACTTGAATCTCTGTGTGAACGCAATCAAGAAACTTCGAGATACGATACAGCTGGAGTTACCATCACCAGTCAAGACAGAGACTGCAACACGTGTCGCTGTCACCAAGACACTGTCGTCAGGGGCAGTTCTTATCAGCACAAAGAGTCCTGTCAAACAGGACAAACCTGCTCTTCCAGCAACTGATCAACTTACAGAAGAGGTGATGTATGATTTTCTGTCCAAGTACCTGATGAGTGAAGATGATCTAGTTGAGAATGGCTATCCACGACCCTGTCCGACATCACCAGGAAAGGCTGTTATCAAAACTAGAAAGGAGCAACCTTCCAAAGACTCCTTGCGGAGGATTTGTTGCCGCTGTGGCAAGCCTTTTAGGGTGCTTGAGGATGGAAATTACTTAACAAGAGAAGAATGTGTATACCATGCTGGAAAACTCTTCCGAAAAAGAGGAGAACCTATCACAAATTATTCCTGCTGTCAAGGAGATGCGGGGAGTCCTGGCTGCTGTGTTGGAAAGGTTCATGTGAGTGATAATGTTTACAACACTGATGGCTTTATGACGACCATAGTGAGTCCACTGACAGACCAACGAAAGAAGATCTTTTCCATGGACTGCGAAATGGCCAGATGGACCACTAGGTTTGAACCCAGACACCTTTACCTTATGGAGGTTTTGTTCAGTGGAGTAACAGAAGAGTCATTGCGTGGTGTGACCACAAACATACATGAAGTACAAGCAGTACTTTTGAGCATGATTCACAGAGACACTATACTGGTTGGACATAGCTTGGAGAGTGACCTCAAAGCAACCAAGTTAATCCATAGTAAAGTGGTAGATACTTCTGTGGTATTTCCCCACCGACTGGGCCCTCCCTACAAGAGAGCACTTCGTAACCTCATGGCAGAACATCTGAAGAAGATTATTCAGGATAGCGTTGATGGCCATGACAGTCATGAGGATGCAGCAGCATGCTTAGAACTGATGAGATGGAGGGTGAAAGAAGACATGAAGAAAACAGCAAGACACAGGTCGCCACGTCATTCACTCTCCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N1G1	RNA exonuclease 1 homolog OS=Homo sapiens OX=9606 GN=REXO1 PE=1 SV=3
Q7TT28	RNA exonuclease 1 homolog OS=Mus musculus OX=10090 GN=Rexo1 PE=1 SV=1
Q8IX06	Putative exonuclease GOR OS=Homo sapiens OX=9606 GN=REXO1L1P PE=5 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003353 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15870 all species →	EloA-BP1	ElonginA binding-protein 1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034922 all species →	Domain	RNA exonuclease 1-like, exonuclease domain	Interproscan
IPR047021 all species →	Family	RNA exonuclease REXO1/REXO3/REXO4-like	Interproscan
IPR013520 all species →	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR031736 all species →	Domain	RNA exonuclease 1 homolog-like domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12801 all species →	RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004527 all species →	Molecular Function	exonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14570	REX1, REXO1, REXO5, RNH70; RNA exonuclease	EC:3.1.-.-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.