Genomic Location: Ap14:8556054...8576736
NR annotation: XP_027056794.1, E3 ubiquitin-protein ligase HECTD3-like [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap14.808.1.5f15dce9 |
| Transcript |
| evm.model.Ap14.808.1.5f15dce9 |
| Protein |
| evm.model.Ap14.808.1.5f15dce9 |
| UniProt accession | Description |
|---|---|
| Q3U487 | E3 ubiquitin-protein ligase HECTD3 OS=Mus musculus OX=10090 GN=Hectd3 PE=1 SV=2 |
| Q5T447 | E3 ubiquitin-protein ligase HECTD3 OS=Homo sapiens OX=9606 GN=HECTD3 PE=1 SV=1 |
| Q15751 | Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens OX=9606 GN=HERC1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001728 (this species only) |
| Ubiquitin family | E3|E3 activity|HECT · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00632 all species → | HECT | HECT-domain (ubiquitin-transferase) | Domain | Interproscan |
| PF03256 all species → | ANAPC10 | Anaphase-promoting complex, subunit 10 (APC10) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000569 all species → | Domain | HECT domain | Interproscan |
| IPR004939 all species → | Domain | APC10/DOC domain | Interproscan |
| IPR035983 all species → | Homologous_superfamily | HECT, E3 ligase catalytic domain | Interproscan |
| IPR042469 all species → | Family | E3 ubiquitin-protein ligase HECTD3 | Interproscan |
| IPR008979 all species → | Homologous_superfamily | Galactose-binding-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46654 all species → | E3 UBIQUITIN-PROTEIN LIGASE HECTD3 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004842 all species → | Molecular Function | ubiquitin-protein transferase activity | Interproscan |
| GO:0043161 all species → | Biological Process | proteasome-mediated ubiquitin-dependent protein catabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12233 | HECTD3; E3 ubiquitin-protein ligase HECTD3 | EC:2.3.2.26 | Ubiquitin system | ko04121 | deepkoala |
Transcript abundance of evm.model.Ap14.808.1.5f15dce9 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
