Gene detail

Detailed information of evm.model.Ap14.840 in Astrangia poculata

Genomic Location: Ap14:8946070...8948334
NR annotation: XP_015778918.1, PREDICTED: uncharacterized protein LOC107356809 [Acropora digitifera]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap14.840

atgaaactattgtccacgtacttggagtacttcaaagatatccagcctgtactgtcattggaagatcttaacagtgtggtcgagtccttagactatgatcgggttgtttgcttttccctgaagacagctaataatgaagacgaactgctggctgaagagatgtataccttcctaaggactggaagttggacgcaagaacaccttgctgcacaaccgtggtttgaagatcctgaattaattcaagaaatcgagtctaaagcaagaaatttcagcagctttgtaaaagaaaatgagcacaatggaagcactaagttcatcttcaccaacgttcacaggagcacaggcgagaacgttgttggtgttcagttgtatgaagatggtcatccaacagattttgagcctcctggaaagcctgagaagcctcgagtaaaaactaagagtggctccagcgttaccatagaatggaaggaatcaccgcacggaataagctctgtccaaacgtacaccatctacttccaacccactgtcagtgattcaagtggagaccccagcagagaatggacgcctttgcagacaaaggaaccagaagctttagtcacagtttatgggttggacgcgacaacggcgtacttgttcaaggtgcagagtcactgtaaagctggaaggagtgctatcagtgatacaagtgacccaattgcgacggaggactctgtcacccatggccaaggtggaaaggctttgtctcaatcgaaccagctgcatggcagggatgatttttcctctgactcccagagtagcgaggctgccagttcaacaggcaccatgacgacaacttccacttctccctataatggtaacaggcctgaaaatgcaaagttacccgacccagaaattcatgtacacaagccccaagataaagggagagatgctacctccggggtcggtaaagcatcatgcagcagaagcaaagcaccttctgttccatatcgtctagcggaaactatgcttcccaaatcaaaaatgattacacctgggtctccagcggtttacaagctttcacgaaacgaaagaatgagacgagagaacagcatgattgctagacaaagcatcggtaggccacccagacgagaacgaggaggacttgctgagaaagttcttatggtagtgggagccacaggagctggaaaaacgactctgatcaacggaatggtgaactacatcttgggcgttgactggaaggatgacttccggtacaagctcgtcgcagaagacaagagtgtgtcacaggctaacagccagacaaaagatatcacagcttatacgctttatcccttgaaaggttcatctcttccatatacatttactatcgttgacacgcccgggtttggtgacaccgaaggcctaaagagagacaagttcatcaccaatcaaataaaagaattcttttctatttctccaccacatggtatcgaccacctggatggcattggctttgtgactcaagcttccttggcgcgtctcactccaccacaggagtacatcttcaactcagtcttgtcaatatttggaaatgatgtttccaaaaacattttcatgatgctcacttttgcagatggccagcatcctccagtactggaagccataaagaaggcaaatattccatgcgagaagtattttaaattcaacaactcagctctatttgcaaataatgcagaaactgaggagagcttcgatgcaatgttttggaagatgggctttcgttcgttccaaagcttctttgctgagttttcaaaatcggaaagcgtaagccttcgccttactaaagaagtattgaaagaacgagagcagctacaaaccctaatagaaggtctgaacccgcaaattacaatgggtctcagcaagatcgaagagatgcgacaggaagagctcattctgcaacatcacgaaatggagatcgaaacaaacaaggagttcacatatactgttgatattaccaagccacgtcagattgacctcaaaggtactggaagacacaccacaacttgtcttcgctgcaactacacatgtcacaagaattgttccattgcggatgacagccagaagcgtggatgctgggctatgaatcctgatggtaattgcagaatctgcacgcgcaattgcatttggtcagaccacaacaatctgccttacctgattgagtacgaaactgtgaccgagataagaacgtcggacgacctaaagaagaagtatgaaacagctgtctaa

Transcript

evm.model.Ap14.840

ATGAAACTATTGTCCACGTACTTGGAGTACTTCAAAGATATCCAGCCTGTACTGTCATTGGAAGATCTTAACAGTGTGGTCGAGTCCTTAGACTATGATCGGGTTGTTTGCTTTTCCCTGAAGACAGCTAATAATGAAGACGAACTGCTGGCTGAAGAGATGTATACCTTCCTAAGGACTGGAAGTTGGACGCAAGAACACCTTGCTGCACAACCGTGGTTTGAAGATCCTGAATTAATTCAAGAAATCGAGTCTAAAGCAAGAAATTTCAGCAGCTTTGTAAAAGAAAATGAGCACAATGGAAGCACTAAGTTCATCTTCACCAACGTTCACAGGAGCACAGGCGAGAACGTTGTTGGTGTTCAGTTGTATGAAGATGGTCATCCAACAGATTTTGAGCCTCCTGGAAAGCCTGAGAAGCCTCGAGTAAAAACTAAGAGTGGCTCCAGCGTTACCATAGAATGGAAGGAATCACCGCACGGAATAAGCTCTGTCCAAACGTACACCATCTACTTCCAACCCACTGTCAGTGATTCAAGTGGAGACCCCAGCAGAGAATGGACGCCTTTGCAGACAAAGGAACCAGAAGCTTTAGTCACAGTTTATGGGTTGGACGCGACAACGGCGTACTTGTTCAAGGTGCAGAGTCACTGTAAAGCTGGAAGGAGTGCTATCAGTGATACAAGTGACCCAATTGCGACGGAGGACTCTGTCACCCATGGCCAAGGTGGAAAGGCTTTGTCTCAATCGAACCAGCTGCATGGCAGGGATGATTTTTCCTCTGACTCCCAGAGTAGCGAGGCTGCCAGTTCAACAGGCACCATGACGACAACTTCCACTTCTCCCTATAATGGTAACAGGCCTGAAAATGCAAAGTTACCCGACCCAGAAATTCATGTACACAAGCCCCAAGATAAAGGGAGAGATGCTACCTCCGGGGTCGGTAAAGCATCATGCAGCAGAAGCAAAGCACCTTCTGTTCCATATCGTCTAGCGGAAACTATGCTTCCCAAATCAAAAATGATTACACCTGGGTCTCCAGCGGTTTACAAGCTTTCACGAAACGAAAGAATGAGACGAGAGAACAGCATGATTGCTAGACAAAGCATCGGTAGGCCACCCAGACGAGAACGAGGAGGACTTGCTGAGAAAGTTCTTATGGTAGTGGGAGCCACAGGAGCTGGAAAAACGACTCTGATCAACGGAATGGTGAACTACATCTTGGGCGTTGACTGGAAGGATGACTTCCGGTACAAGCTCGTCGCAGAAGACAAGAGTGTGTCACAGGCTAACAGCCAGACAAAAGATATCACAGCTTATACGCTTTATCCCTTGAAAGGTTCATCTCTTCCATATACATTTACTATCGTTGACACGCCCGGGTTTGGTGACACCGAAGGCCTAAAGAGAGACAAGTTCATCACCAATCAAATAAAAGAATTCTTTTCTATTTCTCCACCACATGGTATCGACCACCTGGATGGCATTGGCTTTGTGACTCAAGCTTCCTTGGCGCGTCTCACTCCACCACAGGAGTACATCTTCAACTCAGTCTTGTCAATATTTGGAAATGATGTTTCCAAAAACATTTTCATGATGCTCACTTTTGCAGATGGCCAGCATCCTCCAGTACTGGAAGCCATAAAGAAGGCAAATATTCCATGCGAGAAGTATTTTAAATTCAACAACTCAGCTCTATTTGCAAATAATGCAGAAACTGAGGAGAGCTTCGATGCAATGTTTTGGAAGATGGGCTTTCGTTCGTTCCAAAGCTTCTTTGCTGAGTTTTCAAAATCGGAAAGCGTAAGCCTTCGCCTTACTAAAGAAGTATTGAAAGAACGAGAGCAGCTACAAACCCTAATAGAAGGTCTGAACCCGCAAATTACAATGGGTCTCAGCAAGATCGAAGAGATGCGACAGGAAGAGCTCATTCTGCAACATCACGAAATGGAGATCGAAACAAACAAGGAGTTCACATATACTGTTGATATTACCAAGCCACGTCAGATTGACCTCAAAGGTACTGGAAGACACACCACAACTTGTCTTCGCTGCAACTACACATGTCACAAGAATTGTTCCATTGCGGATGACAGCCAGAAGCGTGGATGCTGGGCTATGAATCCTGATGGTAATTGCAGAATCTGCACGCGCAATTGCATTTGGTCAGACCACAACAATCTGCCTTACCTGATTGAGTACGAAACTGTGACCGAGATAAGAACGTCGGACGACCTAAAGAAGAAGTATGAAACAGCTGTCTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000993 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF18078 all species →	Thioredoxin_11	Thioredoxin-like SNTX domain	Domain	Interproscan
PF00735 all species →	Septin	Septin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR040581 all species →	Domain	SNTX, thioredoxin-like domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR030379 all species →	Domain	Septin-type guanine nucleotide-binding (G) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32046 all species →	G DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap14.840.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.