Gene detail

Detailed information of evm.model.Ap14.842 in Astrangia poculata

Genomic Location: Ap14:8951135...8978982
NR annotation: XP_020631560.1, uncharacterized protein LOC110068520 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap14.842

agcataacgggaatcgagaacttagatgaatgcattacgctgctggagcaccacgactgggacttgacggcttgtgttaattcagttagccgacgagaaggttcgcctttacgtttgccagaagctcctgtagctgatgaacctttagttactgatcactcctcagcaggaccatctatagcttcagtttctgtgggggaggtagttggaaatgcaatccctctgcggccatcttcaagaaggataaagtttttaattgaatggagagaacagaccattcctattgtattagatgacagcgaaacaatagcgacaatcaaacgaatgctagagatgcaaattggaataccaatggatcagcaaagccttctgggatggccaaaccaactacagataaacgatgagaccattctgagctctttaaacttaagagaagagactgcgttggttctaatcagcagccgtacagtgacagagacaccaaaacaaagtcaaccatgttcagtaaaaagaaatatgaatggtgaaactagctcatcctcaaaaacctgtaattcactagagaagatcatgttaaatattaaatatggaagcagagaatttaaccttccctatgcgttaacaaagacaataggagaggtcaagacagatatcctttccctgtctggtgttccttgtagatatcagtgttggtcaggctggcctgataatgtcactgacgatatgtgccttgcagatgcaaacctatcatttccagtacacagtttaacaatgaaaaaaagtgggcaagatacctcttcagagtgtaaagaggctagtacatcaaaagcaagggttatagatgtggacatggaaggaaatgatgatagcagtgaaaatgaagacccatcgttccatgttgacgatgatgacatgttctgtgatgtcgcagctaccagaagtcaaataagtgaaatgttggaagatggctgtacggatgctgctgaaaatttagtcaagtttaccactcaatttgaagaaagagatgccagaccaggtttgtctttcaacggaatgttagttaccctattaaatagtgaatggaggtcatcgaaagggggcttgtcaactatcaacagagagttagcaatacagttggcaaaacaccagaatgtggaagtctgtgtttatctcccccattgtagcgaagaagacaaggaagatgctggtggacacaatgttaagctcattaaagcagaagaacttccaggttttgagccgattgattggctggcctcattacctaaagatcatcttcctcattgtataataggacatggagttaatcttggccgtcaaataccactcataaagcgtcatcatctttgtaagtggattcaagttgttcacactgcgcctgaagaacttggaatgtacaaaagttatgaagaagcaatttgcagaggagagcaaaaacaccaagcagaagtaaaactctgtgaattggctgatcaagttgttgctgtaggacccaagttagcagatgtttactctcgctgccttcgcttcagtaaaaaagatcaagatgttttcaatcttaccccaagcattttcactgagtttcaaagtgttgaacaagccactgaagaaagaaggaagttttgtgttttggtatttgggcgtggtgataatgaagatttcaagttgaagggatatgacattgctgttcaagcagttgccgaattgaatgacgcatcctaccaactcatgtttgttggtgcaccagcaagcaaagaggatgaagtagcagaaaggttactccagtatggtatcccccgcagtcagctaactgttcgacgctttaacgaaagcagagaacaattagctaaattgttctgtgaggtggatctggcaatcatgccatccaggactgaggggtttggtttgactgctcttgaagccttatctgccggtctgccagttcttgtaagtggtaactcaggacttggagatgctctgaagaaggttccttctggtccttcttgtgtagtagattcagaagatcctaaagaatggtccaaggcaatcagaagtgtccgtcaaaaagaaagagggttacgacttgaagaaaccgaacttctttggagaagttatgctgaaaagttcagctgggagaaacagtgtgcctgccttgtacaaagaatgataaatctcacatttgatgccgaggatcctccagaaaatttaactccatgtccatcttcgaaaagatcacaaattaaggaaaaagattttcgtaggaacacttcttccaagggaacacttctccacgaaagggaaacgtatataccctccttccacagaggtccttctaacgagaaaacttgcctctcaaatgatcgggtacttccaaccactaatactggtgaaaagatcgcgatcaagaaactagatgtgtctgcttctcgtcgcttagccaagcgggtgtatcttaaatcagagaagatcaaaaccggtaaagggcaatttgtttccatctacaaaccccccatgtatgaaactttgggactggacggaaaaatgattgccagaaaacacctgaatgtcaaacttgacaggaaacaagacgagcaaaaagaaaaagttcttttggtggtgggcgccactggagcgggtaagagaactcttatcaatgccatgttcaactacatcatgggagttgaatggaaagatgaatttcgattcaagatagtcaccgaggaggacaattctcaagctaatagtgtgacaagaggaatcactgcctacactatccacccgatggaggggtctgccattccttacgtattcacaatagttgacactcccgggtttggcgacactgaaggaatgtcgcgagacttcttttttaccaaccaaatcaaagaatttttttctctcaaaccgcctaatggtatcaatcatgtcgacggcgttggatttgttactcagtcttctctcccacggctgacgccgacagagaagtacatcttcgattctattctttccatatttggaaaggatgttaaaaacaacttctttatgatgattacttttgcagatggcacgaagcctccagtgttagaagcaatagaaaaggcacagatatcctatgacagcttttttaaatttaacaattcagctctcttcgccagcaatgcaaatgatgacggatcagacgaaatgttttggaacatgggaaacaaattttttaacaatttttttgccaagttcagtgcaaccaacagcgtaagtcttcagctcacacatcaagtcttgcaagaacgagagcagctggagaccctcggcaaagacctctgtacacaaatagaaaaggtacgtggaaaatttgtagaaattggaaaagtgaagcgcactctagagcagcttgaagtacaaactgaacagaacagagagttcgagattgtcatccccgtcatgaggccgagagaaattgacctcacaggaaccggaaaatgcactcttgtgtgcttacgctgcaactttacttgtcaaatcgattgcgctgttggcattgaaaagaaaggttgcgttgctatggatgcatatgggaactgcaaaatatgcgttggaaaatgcccatgggattttcataggggtgtcccctacaaaatggaatacacaacagtcatggagaagagaacatttgcggatttaaaaaggaaatacagcctggcagtttcaggcaaggccaaggtacaggacaagcttagcgagctggaaaattgtcttcatgatttaagattcgaggttctattcgacatgtacaaggttcgggagagtcttcatcgcctggatgaaattgcgctaaaacccaatcctctcacacaagtgcagtacattgagctgcttatcgcgaccgaaaatagagaaggccgaccagggtttaaggatcgcatagaagcctttgaagaggtcaagagcaaagccaaattgtttgaaaagattaaaagtaaagacgacgtttcgaaggtgttagacgagtttataccaatggaagaaagaagaagtagttcgatacatcggcgacaccaaaatttggaatgcgccatacaatga

Transcript

evm.model.Ap14.842

AGCATAACGGGAATCGAGAACTTAGATGAATGCATTACGCTGCTGGAGCACCACGACTGGGACTTGACGGCTTGTGTTAATTCAGTTAGCCGACGAGAAGGTTCGCCTTTACGTTTGCCAGAAGCTCCTGTAGCTGATGAACCTTTAGTTACTGATCACTCCTCAGCAGGACCATCTATAGCTTCAGTTTCTGTGGGGGAGGTAGTTGGAAATGCAATCCCTCTGCGGCCATCTTCAAGAAGGATAAAGTTTTTAATTGAATGGAGAGAACAGACCATTCCTATTGTATTAGATGACAGCGAAACAATAGCGACAATCAAACGAATGCTAGAGATGCAAATTGGAATACCAATGGATCAGCAAAGCCTTCTGGGATGGCCAAACCAACTACAGATAAACGATGAGACCATTCTGAGCTCTTTAAACTTAAGAGAAGAGACTGCGTTGGTTCTAATCAGCAGCCGTACAGTGACAGAGACACCAAAACAAAGTCAACCATGTTCAGTAAAAAGAAATATGAATGGTGAAACTAGCTCATCCTCAAAAACCTGTAATTCACTAGAGAAGATCATGTTAAATATTAAATATGGAAGCAGAGAATTTAACCTTCCCTATGCGTTAACAAAGACAATAGGAGAGGTCAAGACAGATATCCTTTCCCTGTCTGGTGTTCCTTGTAGATATCAGTGTTGGTCAGGCTGGCCTGATAATGTCACTGACGATATGTGCCTTGCAGATGCAAACCTATCATTTCCAGTACACAGTTTAACAATGAAAAAAAGTGGGCAAGATACCTCTTCAGAGTGTAAAGAGGCTAGTACATCAAAAGCAAGGGTTATAGATGTGGACATGGAAGGAAATGATGATAGCAGTGAAAATGAAGACCCATCGTTCCATGTTGACGATGATGACATGTTCTGTGATGTCGCAGCTACCAGAAGTCAAATAAGTGAAATGTTGGAAGATGGCTGTACGGATGCTGCTGAAAATTTAGTCAAGTTTACCACTCAATTTGAAGAAAGAGATGCCAGACCAGGTTTGTCTTTCAACGGAATGTTAGTTACCCTATTAAATAGTGAATGGAGGTCATCGAAAGGGGGCTTGTCAACTATCAACAGAGAGTTAGCAATACAGTTGGCAAAACACCAGAATGTGGAAGTCTGTGTTTATCTCCCCCATTGTAGCGAAGAAGACAAGGAAGATGCTGGTGGACACAATGTTAAGCTCATTAAAGCAGAAGAACTTCCAGGTTTTGAGCCGATTGATTGGCTGGCCTCATTACCTAAAGATCATCTTCCTCATTGTATAATAGGACATGGAGTTAATCTTGGCCGTCAAATACCACTCATAAAGCGTCATCATCTTTGTAAGTGGATTCAAGTTGTTCACACTGCGCCTGAAGAACTTGGAATGTACAAAAGTTATGAAGAAGCAATTTGCAGAGGAGAGCAAAAACACCAAGCAGAAGTAAAACTCTGTGAATTGGCTGATCAAGTTGTTGCTGTAGGACCCAAGTTAGCAGATGTTTACTCTCGCTGCCTTCGCTTCAGTAAAAAAGATCAAGATGTTTTCAATCTTACCCCAAGCATTTTCACTGAGTTTCAAAGTGTTGAACAAGCCACTGAAGAAAGAAGGAAGTTTTGTGTTTTGGTATTTGGGCGTGGTGATAATGAAGATTTCAAGTTGAAGGGATATGACATTGCTGTTCAAGCAGTTGCCGAATTGAATGACGCATCCTACCAACTCATGTTTGTTGGTGCACCAGCAAGCAAAGAGGATGAAGTAGCAGAAAGGTTACTCCAGTATGGTATCCCCCGCAGTCAGCTAACTGTTCGACGCTTTAACGAAAGCAGAGAACAATTAGCTAAATTGTTCTGTGAGGTGGATCTGGCAATCATGCCATCCAGGACTGAGGGGTTTGGTTTGACTGCTCTTGAAGCCTTATCTGCCGGTCTGCCAGTTCTTGTAAGTGGTAACTCAGGACTTGGAGATGCTCTGAAGAAGGTTCCTTCTGGTCCTTCTTGTGTAGTAGATTCAGAAGATCCTAAAGAATGGTCCAAGGCAATCAGAAGTGTCCGTCAAAAAGAAAGAGGGTTACGACTTGAAGAAACCGAACTTCTTTGGAGAAGTTATGCTGAAAAGTTCAGCTGGGAGAAACAGTGTGCCTGCCTTGTACAAAGAATGATAAATCTCACATTTGATGCCGAGGATCCTCCAGAAAATTTAACTCCATGTCCATCTTCGAAAAGATCACAAATTAAGGAAAAAGATTTTCGTAGGAACACTTCTTCCAAGGGAACACTTCTCCACGAAAGGGAAACGTATATACCCTCCTTCCACAGAGGTCCTTCTAACGAGAAAACTTGCCTCTCAAATGATCGGGTACTTCCAACCACTAATACTGGTGAAAAGATCGCGATCAAGAAACTAGATGTGTCTGCTTCTCGTCGCTTAGCCAAGCGGGTGTATCTTAAATCAGAGAAGATCAAAACCGGTAAAGGGCAATTTGTTTCCATCTACAAACCCCCCATGTATGAAACTTTGGGACTGGACGGAAAAATGATTGCCAGAAAACACCTGAATGTCAAACTTGACAGGAAACAAGACGAGCAAAAAGAAAAAGTTCTTTTGGTGGTGGGCGCCACTGGAGCGGGTAAGAGAACTCTTATCAATGCCATGTTCAACTACATCATGGGAGTTGAATGGAAAGATGAATTTCGATTCAAGATAGTCACCGAGGAGGACAATTCTCAAGCTAATAGTGTGACAAGAGGAATCACTGCCTACACTATCCACCCGATGGAGGGGTCTGCCATTCCTTACGTATTCACAATAGTTGACACTCCCGGGTTTGGCGACACTGAAGGAATGTCGCGAGACTTCTTTTTTACCAACCAAATCAAAGAATTTTTTTCTCTCAAACCGCCTAATGGTATCAATCATGTCGACGGCGTTGGATTTGTTACTCAGTCTTCTCTCCCACGGCTGACGCCGACAGAGAAGTACATCTTCGATTCTATTCTTTCCATATTTGGAAAGGATGTTAAAAACAACTTCTTTATGATGATTACTTTTGCAGATGGCACGAAGCCTCCAGTGTTAGAAGCAATAGAAAAGGCACAGATATCCTATGACAGCTTTTTTAAATTTAACAATTCAGCTCTCTTCGCCAGCAATGCAAATGATGACGGATCAGACGAAATGTTTTGGAACATGGGAAACAAATTTTTTAACAATTTTTTTGCCAAGTTCAGTGCAACCAACAGCGTAAGTCTTCAGCTCACACATCAAGTCTTGCAAGAACGAGAGCAGCTGGAGACCCTCGGCAAAGACCTCTGTACACAAATAGAAAAGGTACGTGGAAAATTTGTAGAAATTGGAAAAGTGAAGCGCACTCTAGAGCAGCTTGAAGTACAAACTGAACAGAACAGAGAGTTCGAGATTGTCATCCCCGTCATGAGGCCGAGAGAAATTGACCTCACAGGAACCGGAAAATGCACTCTTGTGTGCTTACGCTGCAACTTTACTTGTCAAATCGATTGCGCTGTTGGCATTGAAAAGAAAGGTTGCGTTGCTATGGATGCATATGGGAACTGCAAAATATGCGTTGGAAAATGCCCATGGGATTTTCATAGGGGTGTCCCCTACAAAATGGAATACACAACAGTCATGGAGAAGAGAACATTTGCGGATTTAAAAAGGAAATACAGCCTGGCAGTTTCAGGCAAGGCCAAGGTACAGGACAAGCTTAGCGAGCTGGAAAATTGTCTTCATGATTTAAGATTCGAGGTTCTATTCGACATGTACAAGGTTCGGGAGAGTCTTCATCGCCTGGATGAAATTGCGCTAAAACCCAATCCTCTCACACAAGTGCAGTACATTGAGCTGCTTATCGCGACCGAAAATAGAGAAGGCCGACCAGGGTTTAAGGATCGCATAGAAGCCTTTGAAGAGGTCAAGAGCAAAGCCAAATTGTTTGAAAAGATTAAAAGTAAAGACGACGTTTCGAAGGTGTTAGACGAGTTTATACCAATGGAAGAAAGAAGAAGTAGTTCGATACATCGGCGACACCAAAATTTGGAATGCGCCATACAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P54731	FAS-associated factor 1 OS=Mus musculus OX=10090 GN=Faf1 PE=1 SV=2
Q924K2	FAS-associated factor 1 OS=Rattus norvegicus OX=10116 GN=Faf1 PE=1 SV=1
Q9UNN5	FAS-associated factor 1 OS=Homo sapiens OX=9606 GN=FAF1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006444 (this species only)
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14555 all species →	UBA_4	UBA-like domain	Domain	Interproscan
PF20706 all species →	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan
PF00735 all species →	Septin	Septin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR030379 all species →	Domain	Septin-type guanine nucleotide-binding (G) domain	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR044541 all species →	Domain	FAF1, UBA-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32046 all species →	G DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap14.842.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.