Gene detail

Detailed information of evm.model.Ap14.846 in Astrangia poculata

Genomic Location: Ap14:9013094...9032355
NR annotation: CAH3115970.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap14.846

atggcaggagacggcgacagagaaatggtcctagcgaactttcagagcataacgggaatcgagaacttagatgaatgcattacgctgctggagcaccacgactgggacttgacggcctgtgttaattcagtgctagccgacgagacggattcgcctttacgtttgccagaagctcctgtagctgatgaacctttagttactgatcactcctcagcaggaccatctatagcttcagtttctgtgggggaggtggttggaaatgcaatccctctgcggccatcttcaagaaggataaagtttttaattgaatggagagaacagaccattcctattgtattagatgacagcgaaacaatagcgacaatcaaacgaatgctagagatgcaaattggaataccaatggatcagcaaagccttctgggatggccaaaccaactacagataaacgatgagagcgttctgagcactttaaacttgagagaagagactgcgttggttctaatcagcagccatacagtgacagaaacaccaaaacaaagtcaaccatgttcagtaaaaagaaatatgaatggagaaactagctcatcctcaaaaagctgtaattcactagagaagatcatgttgaatattaaatatggaagcagagaatttaaccttccctatgcattaacaaagacaataggagaggtaaagacagatatcctttccttgtctggtgttccttgtagatatcagtgttggtcaggctggcctgataatgtcactgacgatatgtgccttgcagatgcaaatctatcatttccagtacacaatttaacaataaaaagaagtggacaagacaccccttcagacagtaaagaggctagtacatcaaaagcaagattaatagatgtggatatggaaggaaatgatgatagcagtgaaaatgaagacccatcgttccatgttgatgatgatgacatgttctgtgatgtggcagctactaggagtcaaattagcgaaatgttggaagatggctgttcagatgctgctgaaaatttagtcaagtttaccactcaatttgaagaaaggtatggtgaaatacaccctcatttttacatgggcccacttactgaagccattaaggaagccggcggagcctcagctaaagagagaagaccgttgcttgtttatctacatcacgatggaagtatcttaacaaacgtattttgtagtcaactgatctgctctgagactattgtgaactacatcagtgggaactttgttgtgtgggcctgggacatgactcacgataccaacagaacgagatttttggacatggtgacgcagcattttggaagtgtggccgcgagcacggtcagagggtttggggcagagcagtatccacttcttttagtcggtttgaaaaatagatcagcgatggaaatttgttcagttcttcaaggttctgtcacccttgacgagctcatgacagggctaatgagcgcgcacgagacatttcaacaagcaatggacgttgaaattagagaagaggaagaaagagaagccagggaactggtgaagagagaacaagatgaagcataccaagcttcgctcctccaagatcgggcaaaggctgaagaaaaacgaagacaagaagaggaggaaattctgtccaagaaacttcacgaagaacagactcttcacgaagctcagcttaaagaggcacaacggttatctcttatggatcaccttcctgcggagcctgggtccgaatgcacagctcccgtttccaatctccggtttaggcttcctaacggcgatactgtagccagaagattccttgcaagcaatccgcttcaggttgtgttaacttttgttcagacaagaggctatctagaaagtgaatataaagtagtgacaaatttccctcggagagatctttcagctctggatacatcagaatcacttcagtccgttggactttatcctcaagaaacgatttttgttgaagagcgctag

Transcript

evm.model.Ap14.846

ATGGCAGGAGACGGCGACAGAGAAATGGTCCTAGCGAACTTTCAGAGCATAACGGGAATCGAGAACTTAGATGAATGCATTACGCTGCTGGAGCACCACGACTGGGACTTGACGGCCTGTGTTAATTCAGTGCTAGCCGACGAGACGGATTCGCCTTTACGTTTGCCAGAAGCTCCTGTAGCTGATGAACCTTTAGTTACTGATCACTCCTCAGCAGGACCATCTATAGCTTCAGTTTCTGTGGGGGAGGTGGTTGGAAATGCAATCCCTCTGCGGCCATCTTCAAGAAGGATAAAGTTTTTAATTGAATGGAGAGAACAGACCATTCCTATTGTATTAGATGACAGCGAAACAATAGCGACAATCAAACGAATGCTAGAGATGCAAATTGGAATACCAATGGATCAGCAAAGCCTTCTGGGATGGCCAAACCAACTACAGATAAACGATGAGAGCGTTCTGAGCACTTTAAACTTGAGAGAAGAGACTGCGTTGGTTCTAATCAGCAGCCATACAGTGACAGAAACACCAAAACAAAGTCAACCATGTTCAGTAAAAAGAAATATGAATGGAGAAACTAGCTCATCCTCAAAAAGCTGTAATTCACTAGAGAAGATCATGTTGAATATTAAATATGGAAGCAGAGAATTTAACCTTCCCTATGCATTAACAAAGACAATAGGAGAGGTAAAGACAGATATCCTTTCCTTGTCTGGTGTTCCTTGTAGATATCAGTGTTGGTCAGGCTGGCCTGATAATGTCACTGACGATATGTGCCTTGCAGATGCAAATCTATCATTTCCAGTACACAATTTAACAATAAAAAGAAGTGGACAAGACACCCCTTCAGACAGTAAAGAGGCTAGTACATCAAAAGCAAGATTAATAGATGTGGATATGGAAGGAAATGATGATAGCAGTGAAAATGAAGACCCATCGTTCCATGTTGATGATGATGACATGTTCTGTGATGTGGCAGCTACTAGGAGTCAAATTAGCGAAATGTTGGAAGATGGCTGTTCAGATGCTGCTGAAAATTTAGTCAAGTTTACCACTCAATTTGAAGAAAGGTATGGTGAAATACACCCTCATTTTTACATGGGCCCACTTACTGAAGCCATTAAGGAAGCCGGCGGAGCCTCAGCTAAAGAGAGAAGACCGTTGCTTGTTTATCTACATCACGATGGAAGTATCTTAACAAACGTATTTTGTAGTCAACTGATCTGCTCTGAGACTATTGTGAACTACATCAGTGGGAACTTTGTTGTGTGGGCCTGGGACATGACTCACGATACCAACAGAACGAGATTTTTGGACATGGTGACGCAGCATTTTGGAAGTGTGGCCGCGAGCACGGTCAGAGGGTTTGGGGCAGAGCAGTATCCACTTCTTTTAGTCGGTTTGAAAAATAGATCAGCGATGGAAATTTGTTCAGTTCTTCAAGGTTCTGTCACCCTTGACGAGCTCATGACAGGGCTAATGAGCGCGCACGAGACATTTCAACAAGCAATGGACGTTGAAATTAGAGAAGAGGAAGAAAGAGAAGCCAGGGAACTGGTGAAGAGAGAACAAGATGAAGCATACCAAGCTTCGCTCCTCCAAGATCGGGCAAAGGCTGAAGAAAAACGAAGACAAGAAGAGGAGGAAATTCTGTCCAAGAAACTTCACGAAGAACAGACTCTTCACGAAGCTCAGCTTAAAGAGGCACAACGGTTATCTCTTATGGATCACCTTCCTGCGGAGCCTGGGTCCGAATGCACAGCTCCCGTTTCCAATCTCCGGTTTAGGCTTCCTAACGGCGATACTGTAGCCAGAAGATTCCTTGCAAGCAATCCGCTTCAGGTTGTGTTAACTTTTGTTCAGACAAGAGGCTATCTAGAAAGTGAATATAAAGTAGTGACAAATTTCCCTCGGAGAGATCTTTCAGCTCTGGATACATCAGAATCACTTCAGTCCGTTGGACTTTATCCTCAAGAAACGATTTTTGTTGAAGAGCGCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P54731	FAS-associated factor 1 OS=Mus musculus OX=10090 GN=Faf1 PE=1 SV=2
Q9UNN5	FAS-associated factor 1 OS=Homo sapiens OX=9606 GN=FAF1 PE=1 SV=2
Q924K2	FAS-associated factor 1 OS=Rattus norvegicus OX=10116 GN=Faf1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006444 (this species only)
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD\|UBX · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21021 all species →	FAF1	Fas-associated factor 1	Domain	Interproscan
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan
PF14555 all species →	UBA_4	UBA-like domain	Domain	Interproscan
PF00789 all species →	UBX	UBX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR033043 all species →	Domain	FAS-associated factor 1-like, UBX domain	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR050730 all species →	Family	UBX domain-containing protein	Interproscan
IPR044541 all species →	Domain	FAF1, UBA-like domain	Interproscan
IPR049483 all species →	Domain	Fas-associated factor 1/2-like, UAS domain	Interproscan
IPR001012 all species →	Domain	UBX domain	Interproscan
IPR006577 all species →	Domain	UAS	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23322 all species →	FAS-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20703	FAF1; FAS-associated factor 1	-	Toll and Imd signaling pathway	ko04624	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.