Genomic Location: Ap14:10086851...10124750
NR annotation: KAJ7330602.1, HEAT repeat-containing protein 1 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap14.951 |
| Transcript |
| evm.model.Ap14.951 |
| Protein |
| evm.model.Ap14.951 |
| UniProt accession | Description |
|---|---|
| Q7SY48 | HEAT repeat-containing protein 1 OS=Danio rerio OX=7955 GN=heatr1 PE=2 SV=1 |
| Q9H583 | HEAT repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=HEATR1 PE=1 SV=3 |
| Q9GM44 | HEAT repeat-containing protein 1 (Fragment) OS=Macaca fascicularis OX=9541 GN=HEATR1 PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002638 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08146 all species → | BP28CT | BP28CT (NUC211) domain | Domain | Interproscan |
| PF12397 all species → | U3snoRNP10 | U3 small nucleolar RNA-associated protein 10 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR040191 all species → | Family | U3 small nucleolar RNA-associated protein 10 | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR012954 all species → | Domain | BP28, C-terminal domain | Interproscan |
| IPR022125 all species → | Domain | U3 small nucleolar RNA-associated protein 10, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13457 all species → | BAP28 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000462 all species → | Biological Process | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Interproscan |
| GO:0030515 all species → | Molecular Function | snoRNA binding | Interproscan |
| GO:0030686 all species → | Cellular Component | 90S preribosome | Interproscan |
| GO:0032040 all species → | Cellular Component | small-subunit processome | Interproscan |
| GO:0034455 all species → | Cellular Component | t-UTP complex | Interproscan |
| GO:0045943 all species → | Biological Process | positive regulation of transcription by RNA polymerase I | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14550 | UTP10, HEATR1; U3 small nucleolar RNA-associated protein 10 | - | Ribosome biogenesis | ko03009 | deepkoala |
Transcript abundance of evm.model.Ap14.951 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
