Gene detail

Detailed information of evm.model.Ap14.96 in Astrangia poculata

Genomic Location: Ap14:924835...926942
NR annotation: XP_020611869.1, growth arrest and DNA damage-inducible protein GADD45 beta-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3ZBN6	Growth arrest and DNA damage-inducible protein GADD45 alpha OS=Bos taurus OX=9913 GN=GADD45A PE=2 SV=1
O95257	Growth arrest and DNA damage-inducible protein GADD45 gamma OS=Homo sapiens OX=9606 GN=GADD45G PE=1 SV=1
P24523	Growth arrest and DNA damage-inducible protein GADD45 alpha OS=Cricetulus griseus OX=10029 GN=GADD45A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010007 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01248 all species →	Ribosomal_L7Ae	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029064 all species →	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan
IPR004038 all species →	Domain	Ribosomal protein eL8/eL30/eS12/Gadd45	Interproscan
IPR024824 all species →	Family	Growth arrest and DNA damage-inducible protein GADD45	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10411 all species →	GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEIN GADD45	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0051726 all species →	Biological Process	regulation of cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04402	GADD45; growth arrest and DNA-damage-inducible protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.