Gene detail

Detailed information of evm.model.Ap2.1219.1.5f15df2e in Astrangia poculata

Genomic Location: Ap2:12539204...12559580
NR annotation: XP_027041562.1, aspartate aminotransferase, cytoplasmic-like [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P00504	Aspartate aminotransferase, cytoplasmic OS=Gallus gallus OX=9031 GN=GOT1 PE=1 SV=3
P00503	Aspartate aminotransferase, cytoplasmic OS=Sus scrofa OX=9823 GN=GOT1 PE=1 SV=3
P08906	Aspartate aminotransferase, cytoplasmic OS=Equus caballus OX=9796 GN=GOT1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001598 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155 all species →	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan
PF03357 all species →	Snf7	Snf7	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000796 all species →	Family	Aspartate/other aminotransferase	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR004838 all species →	Binding_site	Aminotransferases, class-I, pyridoxal-phosphate-binding site	Interproscan
IPR004839 all species →	Domain	Aminotransferase, class I/classII	Interproscan
IPR005024 all species →	Family	Snf7 family	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11879 all species →	ASPARTATE AMINOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0008483 all species →	Molecular Function	transaminase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0004069 all species →	Molecular Function	L-aspartate:2-oxoglutarate aminotransferase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006532 all species →	Biological Process	aspartate biosynthetic process	Interproscan
GO:0007034 all species →	Biological Process	vacuolar transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14454	GOT1; aspartate aminotransferase, cytoplasmic	EC:2.6.1.1	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.