Gene detail

Detailed information of evm.model.Ap2.135 in Astrangia poculata

Genomic Location: Ap2:1065535...1082353
NR annotation: XP_020603744.1, transcription elongation regulator 1-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.135

atggaaggcgacgaattcaaaacggctcgtaaaggcgctctacagtttttcctggaattagacgtaatagaggacagaaattatgcctcgaaagctgcttgtgaaacggaaagtcgacgtcctcggagttttagcaaaataaagttatatcttggtccggcttcgcaagtgacaaccggaaatgaatttgattggttgacgcttatcacgccactaatagaagccatgagacacagcatgcccccaccccttatgtcccaaagggctatccctccaaacataagagggcccccacctcgtgggcctgctgggcaaggtcccagagggtctcttttgggtcagcctccagggccatttatgcgcggaccttttgatccaaggaacatgatgaacaatatgagaccaccttttggaggacctcaggggaatgctcctatgttacctaatatgcagtcaaggccagtgatgccaaatcaaatgccgcctatgatgccaaaccagcaacaactgcaaatgcagcaacagcagcagctgtcacagggcaaagatcctcccatgattgacactaatggcgacatgtggcttgagcataagactccagaaggaaaggtgtactattataatgcaaggacccgggagtctgcatgggagaaaccaaaaaatctagttagcccgccatcacagaatcagacacctgcatctgctcagcaaggacaacaaccaacacaacaggttcaggggcagaatattcctcttgagggacaacaacaaaagcctgctgcagagcaagatactacacaagaaaatgatcagcaacagaatcagactcagcaacagactggtgcacagcagacagcaagcagtacaactgctacacctgataataagctgccacaacaaagcaatcctggaatgccgccacctgggccattcgtccctggtatgccaccaccccgacttcctccacctggaatgattcctggcatgatgccgccacgtcttcccccaccgggtatgcctcctcctggtctacacatgcctcctatgggaatgccacccagccctagcagcgagtggtccgagcaccgcacggcagaaggacgagtgtactactacaactctagaaccctacagtctacatgggagaggcctaaggagatggacaagggaccacccccaatgcaagtgatgccgccgccaggaatgcctccccctggaatgcttcctcctggactttttcctggacttattcgaccaggaatgcagcatcagcccccacctgcaggggggacaggtgccatgacagagccatcctctcagggggatgctggggataaggatagtggtgacaagaaagaaggcaacagtgaagaaaatgatgccgctaaagaaggagagaaagaaagtgaagacgcacaaaaggaagagaatcaagatgaagacggagacaagagtaaacctgttgccagtcaactgattccaggaacaagctggtgtgttgtgtggacaggagatgaaaagatgttctttttcaatcccacttcaaggctgtcaatatgggagaaacctgatgagcttgagagcaatgataaagttgacgagatcgttagcaagggccctccaaagaaacagccaccaacagaaacaaaaaaagagaacaagaccccagcatccactgttggagacagtgacgaaggccctcctgccaagaaacagaggactggaagccaaagtgaggagatacatgatgtgcaaatgacagatcaggaaactaaggaagagataccgcagcctaaacactttgaacagcaggagccagttgagcagcctgcacctgtagtgcaaacaatgaaaaaaactgttcctccagtgaaagaaaaaaagactatgctctcacttgaagacagaatgaaggaattcagagatatgatgctagaaagaggggtgtcagcattttcaacttgggaaaaggagctgccaaaaatagtatttgatcccagatttttactgctgacccagaaggaacggaagcagtgttttgaaaagtttgtacgcactcgtgctgatgaggaaagacaagaaagaaagagcaaactcaaagctaagaaagatgagtttaaagctttggtggaagaggctagaactgctggaaagacaactttcagtgaatttgctatgaagtatggaaaggatgatcgattcaaaggcatagaaaagatgaaggaccgagagaatctgtttacagagttcctggccgagctaaagaagaaggagaaagagagtctaaaactcaagcaggataagattcacaatgactttgtggagttattgactgaacaaaagctcgacagcaaagcacagtggcgcaaggtgcgcagcaagatagagaaggacccacgatacaaagctgtggagagctcaatgcagaaagaagactggtttaaagaacatgttgaacaactttacaagaaagaaaacgctgacaaagaaaaagaaaaagagaaacaagaaaggatagaagcaagtctccgagagcgagaacgtgaagtcagagcaagtcaagctgaacttgccaaggccagagagaaagagaaggagcagcacctcagagacaaagcagaacaacatttcaatgctctgttagccgacatggttcgaaatgcagatgttggctggaaggagaccaaaaagagtttgcgtaaagatcatcgctggggaatggccgatgctctgagtaaaagtgacaaggaagcactttttaaaaatcacatagaaagtttaaatcagcgaaaaaaggagcaatttagaaaactattggatgaaactcatgagttaactcttacttcatcttggagaagcattagaaaaattataaaggaagacccaagatattccaagttttcaagtcaggatagaaaacgtgaagaagagttcaatcaatatctccgtgacaaactggctgatgctaaaggggacttcaggcagttgctcaaagaaactcactctattacatacaaaacaaagaaacacatagaagaatctaataaacatctaaaagacatcgaaggcactctaaagaaagacagaagatatttgatactggaatgtgttcccgacgagcgaagtagattgcttaataattacattgaggaattgtaccgaactggaccaccacctccacccacagcctctgcaccctcaaacagatccaaaatgcacccataa

Transcript

evm.model.Ap2.135

ATGGAAGGCGACGAATTCAAAACGGCTCGTAAAGGCGCTCTACAGTTTTTCCTGGAATTAGACGTAATAGAGGACAGAAATTATGCCTCGAAAGCTGCTTGTGAAACGGAAAGTCGACGTCCTCGGAGTTTTAGCAAAATAAAGTTATATCTTGGTCCGGCTTCGCAAGTGACAACCGGAAATGAATTTGATTGGTTGACGCTTATCACGCCACTAATAGAAGCCATGAGACACAGCATGCCCCCACCCCTTATGTCCCAAAGGGCTATCCCTCCAAACATAAGAGGGCCCCCACCTCGTGGGCCTGCTGGGCAAGGTCCCAGAGGGTCTCTTTTGGGTCAGCCTCCAGGGCCATTTATGCGCGGACCTTTTGATCCAAGGAACATGATGAACAATATGAGACCACCTTTTGGAGGACCTCAGGGGAATGCTCCTATGTTACCTAATATGCAGTCAAGGCCAGTGATGCCAAATCAAATGCCGCCTATGATGCCAAACCAGCAACAACTGCAAATGCAGCAACAGCAGCAGCTGTCACAGGGCAAAGATCCTCCCATGATTGACACTAATGGCGACATGTGGCTTGAGCATAAGACTCCAGAAGGAAAGGTGTACTATTATAATGCAAGGACCCGGGAGTCTGCATGGGAGAAACCAAAAAATCTAGTTAGCCCGCCATCACAGAATCAGACACCTGCATCTGCTCAGCAAGGACAACAACCAACACAACAGGTTCAGGGGCAGAATATTCCTCTTGAGGGACAACAACAAAAGCCTGCTGCAGAGCAAGATACTACACAAGAAAATGATCAGCAACAGAATCAGACTCAGCAACAGACTGGTGCACAGCAGACAGCAAGCAGTACAACTGCTACACCTGATAATAAGCTGCCACAACAAAGCAATCCTGGAATGCCGCCACCTGGGCCATTCGTCCCTGGTATGCCACCACCCCGACTTCCTCCACCTGGAATGATTCCTGGCATGATGCCGCCACGTCTTCCCCCACCGGGTATGCCTCCTCCTGGTCTACACATGCCTCCTATGGGAATGCCACCCAGCCCTAGCAGCGAGTGGTCCGAGCACCGCACGGCAGAAGGACGAGTGTACTACTACAACTCTAGAACCCTACAGTCTACATGGGAGAGGCCTAAGGAGATGGACAAGGGACCACCCCCAATGCAAGTGATGCCGCCGCCAGGAATGCCTCCCCCTGGAATGCTTCCTCCTGGACTTTTTCCTGGACTTATTCGACCAGGAATGCAGCATCAGCCCCCACCTGCAGGGGGGACAGGTGCCATGACAGAGCCATCCTCTCAGGGGGATGCTGGGGATAAGGATAGTGGTGACAAGAAAGAAGGCAACAGTGAAGAAAATGATGCCGCTAAAGAAGGAGAGAAAGAAAGTGAAGACGCACAAAAGGAAGAGAATCAAGATGAAGACGGAGACAAGAGTAAACCTGTTGCCAGTCAACTGATTCCAGGAACAAGCTGGTGTGTTGTGTGGACAGGAGATGAAAAGATGTTCTTTTTCAATCCCACTTCAAGGCTGTCAATATGGGAGAAACCTGATGAGCTTGAGAGCAATGATAAAGTTGACGAGATCGTTAGCAAGGGCCCTCCAAAGAAACAGCCACCAACAGAAACAAAAAAAGAGAACAAGACCCCAGCATCCACTGTTGGAGACAGTGACGAAGGCCCTCCTGCCAAGAAACAGAGGACTGGAAGCCAAAGTGAGGAGATACATGATGTGCAAATGACAGATCAGGAAACTAAGGAAGAGATACCGCAGCCTAAACACTTTGAACAGCAGGAGCCAGTTGAGCAGCCTGCACCTGTAGTGCAAACAATGAAAAAAACTGTTCCTCCAGTGAAAGAAAAAAAGACTATGCTCTCACTTGAAGACAGAATGAAGGAATTCAGAGATATGATGCTAGAAAGAGGGGTGTCAGCATTTTCAACTTGGGAAAAGGAGCTGCCAAAAATAGTATTTGATCCCAGATTTTTACTGCTGACCCAGAAGGAACGGAAGCAGTGTTTTGAAAAGTTTGTACGCACTCGTGCTGATGAGGAAAGACAAGAAAGAAAGAGCAAACTCAAAGCTAAGAAAGATGAGTTTAAAGCTTTGGTGGAAGAGGCTAGAACTGCTGGAAAGACAACTTTCAGTGAATTTGCTATGAAGTATGGAAAGGATGATCGATTCAAAGGCATAGAAAAGATGAAGGACCGAGAGAATCTGTTTACAGAGTTCCTGGCCGAGCTAAAGAAGAAGGAGAAAGAGAGTCTAAAACTCAAGCAGGATAAGATTCACAATGACTTTGTGGAGTTATTGACTGAACAAAAGCTCGACAGCAAAGCACAGTGGCGCAAGGTGCGCAGCAAGATAGAGAAGGACCCACGATACAAAGCTGTGGAGAGCTCAATGCAGAAAGAAGACTGGTTTAAAGAACATGTTGAACAACTTTACAAGAAAGAAAACGCTGACAAAGAAAAAGAAAAAGAGAAACAAGAAAGGATAGAAGCAAGTCTCCGAGAGCGAGAACGTGAAGTCAGAGCAAGTCAAGCTGAACTTGCCAAGGCCAGAGAGAAAGAGAAGGAGCAGCACCTCAGAGACAAAGCAGAACAACATTTCAATGCTCTGTTAGCCGACATGGTTCGAAATGCAGATGTTGGCTGGAAGGAGACCAAAAAGAGTTTGCGTAAAGATCATCGCTGGGGAATGGCCGATGCTCTGAGTAAAAGTGACAAGGAAGCACTTTTTAAAAATCACATAGAAAGTTTAAATCAGCGAAAAAAGGAGCAATTTAGAAAACTATTGGATGAAACTCATGAGTTAACTCTTACTTCATCTTGGAGAAGCATTAGAAAAATTATAAAGGAAGACCCAAGATATTCCAAGTTTTCAAGTCAGGATAGAAAACGTGAAGAAGAGTTCAATCAATATCTCCGTGACAAACTGGCTGATGCTAAAGGGGACTTCAGGCAGTTGCTCAAAGAAACTCACTCTATTACATACAAAACAAAGAAACACATAGAAGAATCTAATAAACATCTAAAAGACATCGAAGGCACTCTAAAGAAAGACAGAAGATATTTGATACTGGAATGTGTTCCCGACGAGCGAAGTAGATTGCTTAATAATTACATTGAGGAATTGTACCGAACTGGACCACCACCTCCACCCACAGCCTCTGCACCCTCAAACAGATCCAAAATGCACCCATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CGF7	Transcription elongation regulator 1 OS=Mus musculus OX=10090 GN=Tcerg1 PE=1 SV=2
O14776	Transcription elongation regulator 1 OS=Homo sapiens OX=9606 GN=TCERG1 PE=1 SV=2
Q3B807	Transcription elongation regulator 1-like protein OS=Mus musculus OX=10090 GN=Tcerg1l PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003454 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00397 all species →	WW	WW domain	Domain	Interproscan
PF01846 all species →	FF	FF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036517 all species →	Homologous_superfamily	FF domain superfamily	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR002713 all species →	Domain	FF domain	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR045148 all species →	Family	Transcription elongation regulator 1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15377 all species →	TRANSCRIPTION ELONGATION REGULATOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0070063 all species →	Molecular Function	RNA polymerase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12824	TCERG1, CA150; transcription elongation regulator 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.