Gene detail

Detailed information of evm.model.Ap2.135.1.5f15dcd3 in Astrangia poculata

Genomic Location: Ap2:1065535...1076967
NR annotation: XP_020603744.1, transcription elongation regulator 1-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.135.1.5f15dcd3

atggaaggcgacgaattcaaaacggctcgtaaaggcgctctacagtttttcctggaattagacgtaatagaggacagaaattatgcctcgaaagctgcttgtgaaacggaaagtcgacgtcctcggagttttagcaaaataaagttatatcttggtccggcttcgcaagtgacaaccggaaatgaatttgattggttgacgcttatcacgccactaatagaagccatgagacacagcatgcccccaccccttatgtcccaaagggctatccctccaaacataagagggcccccacctcgtgggcctgctgggcaaggtcccagagggtctcttttgggtcagcctccagggccatttatgcgcggaccttttgatccaaggaacatgatgaacaatatgagaccaccttttggaggacctcaggggaatgctcctatgttacctaatatgcagtcaaggccagtgatgccaaatcaaatgccgcctatgatgccaaaccagcaacaactgcaaatgcagcaacagcagcagctgtcacagggcaaagatcctcccatgattgacactaatggcgacatgtggcttgagcataagactccagaaggaaaggtgtactattataatgcaaggacccgggagtctgcatgggagaaaccaaaaaatctagttagcccgccatcacagaatcagacacctgcatctgctcagcaaggacaacaaccaacacaacaggttcaggggcagaatattcctcttgagggacaacaacaaaagcctgctgcagagcaagatactacacaagaaaatgatcagcaacagaatcagactcagcaacagactggtgcacagcagacagcaagcagtacaactgctacacctgataataagctgccacaacaaagcaatcctggaatgccgccacctgggccattcgtccctggtatgccaccaccccgacttcctccacctggaatgattcctggcatgatgccgccacgtcttcccccaccgggtatgcctcctcctggtctacacatgcctcctatgggaatgccacccagccctagcagcgagtggtccgagcaccgcacggcagaaggacgagtgtactactacaactctagaaccctacagtctacatgggagaggcctaaggagatggacaagggaccacccccaatgcaagtgatgccgccgccaggaatgcctccccctggaatgcttcctcctggactttttcctggacttattcgaccaggaatgcagcatcagcccccacctgcaggggggacaggtgccatgacagagccatcctctcagggggatgctggggataaggatagtggtgacaagaaagaaggcaacagtgaagaaaatgatgccgctaaagaaggagagaaagaaagtgaagacgcacaaaaggaagagaatcaagatgaagacggagacaagagtaaacctgttgccagtcaactgattccaggaacaagctggtgtgttgtgtggacaggagatgaaaagatgttctttttcaatcccacttcaaggctgtcaatatgggagaaacctgatgagcttgagagcaatgataaagttgacgagatcgttagcaagggccctccaaagaaacagccaccaacagaaacaaaaaaagagaacaagaccccagcatccactgttggagacagtgacgaaggccctcctgccaagaaacagaggactggaagccaaagtgaggagatacatgatgtgcaaatgacagatcaggaaactaaggaagagataccgcagcctaaacactttgaacagcaggagccagttgagcagcctgcacctgtagtgcaaacaatgaaaaaaactgttcctccagtgaaagaaaaaaagactatgctctcacttgaagacagaatgaaggaattcagagatatgatgctagaaagaggggtgtcagcattttcaacttgggaaaaggagctgccaaaaatagtatttgatcccagatttttactgctgacccagaaggaacggaagcagtgttttgaaaagtttgtacgcactcgtgctgatgaggaaagacaagaaagaaagagcaaactcaaagctaagaaagatgagtttaaagctttggtggaagaggctagaactgctggaaagacaactttcagtgaatttgctatgaagtatggaaaggatgatcgattcaaaggcatagaaaagatgaaggaccgagagaatctgtttacagagttcctggccgagctaaagaagaaggagaaagagagtctaaaactcaagcaggataaggttggtttcttgttcctatggggaggcatgtga

Transcript

evm.model.Ap2.135.1.5f15dcd3

ATGGAAGGCGACGAATTCAAAACGGCTCGTAAAGGCGCTCTACAGTTTTTCCTGGAATTAGACGTAATAGAGGACAGAAATTATGCCTCGAAAGCTGCTTGTGAAACGGAAAGTCGACGTCCTCGGAGTTTTAGCAAAATAAAGTTATATCTTGGTCCGGCTTCGCAAGTGACAACCGGAAATGAATTTGATTGGTTGACGCTTATCACGCCACTAATAGAAGCCATGAGACACAGCATGCCCCCACCCCTTATGTCCCAAAGGGCTATCCCTCCAAACATAAGAGGGCCCCCACCTCGTGGGCCTGCTGGGCAAGGTCCCAGAGGGTCTCTTTTGGGTCAGCCTCCAGGGCCATTTATGCGCGGACCTTTTGATCCAAGGAACATGATGAACAATATGAGACCACCTTTTGGAGGACCTCAGGGGAATGCTCCTATGTTACCTAATATGCAGTCAAGGCCAGTGATGCCAAATCAAATGCCGCCTATGATGCCAAACCAGCAACAACTGCAAATGCAGCAACAGCAGCAGCTGTCACAGGGCAAAGATCCTCCCATGATTGACACTAATGGCGACATGTGGCTTGAGCATAAGACTCCAGAAGGAAAGGTGTACTATTATAATGCAAGGACCCGGGAGTCTGCATGGGAGAAACCAAAAAATCTAGTTAGCCCGCCATCACAGAATCAGACACCTGCATCTGCTCAGCAAGGACAACAACCAACACAACAGGTTCAGGGGCAGAATATTCCTCTTGAGGGACAACAACAAAAGCCTGCTGCAGAGCAAGATACTACACAAGAAAATGATCAGCAACAGAATCAGACTCAGCAACAGACTGGTGCACAGCAGACAGCAAGCAGTACAACTGCTACACCTGATAATAAGCTGCCACAACAAAGCAATCCTGGAATGCCGCCACCTGGGCCATTCGTCCCTGGTATGCCACCACCCCGACTTCCTCCACCTGGAATGATTCCTGGCATGATGCCGCCACGTCTTCCCCCACCGGGTATGCCTCCTCCTGGTCTACACATGCCTCCTATGGGAATGCCACCCAGCCCTAGCAGCGAGTGGTCCGAGCACCGCACGGCAGAAGGACGAGTGTACTACTACAACTCTAGAACCCTACAGTCTACATGGGAGAGGCCTAAGGAGATGGACAAGGGACCACCCCCAATGCAAGTGATGCCGCCGCCAGGAATGCCTCCCCCTGGAATGCTTCCTCCTGGACTTTTTCCTGGACTTATTCGACCAGGAATGCAGCATCAGCCCCCACCTGCAGGGGGGACAGGTGCCATGACAGAGCCATCCTCTCAGGGGGATGCTGGGGATAAGGATAGTGGTGACAAGAAAGAAGGCAACAGTGAAGAAAATGATGCCGCTAAAGAAGGAGAGAAAGAAAGTGAAGACGCACAAAAGGAAGAGAATCAAGATGAAGACGGAGACAAGAGTAAACCTGTTGCCAGTCAACTGATTCCAGGAACAAGCTGGTGTGTTGTGTGGACAGGAGATGAAAAGATGTTCTTTTTCAATCCCACTTCAAGGCTGTCAATATGGGAGAAACCTGATGAGCTTGAGAGCAATGATAAAGTTGACGAGATCGTTAGCAAGGGCCCTCCAAAGAAACAGCCACCAACAGAAACAAAAAAAGAGAACAAGACCCCAGCATCCACTGTTGGAGACAGTGACGAAGGCCCTCCTGCCAAGAAACAGAGGACTGGAAGCCAAAGTGAGGAGATACATGATGTGCAAATGACAGATCAGGAAACTAAGGAAGAGATACCGCAGCCTAAACACTTTGAACAGCAGGAGCCAGTTGAGCAGCCTGCACCTGTAGTGCAAACAATGAAAAAAACTGTTCCTCCAGTGAAAGAAAAAAAGACTATGCTCTCACTTGAAGACAGAATGAAGGAATTCAGAGATATGATGCTAGAAAGAGGGGTGTCAGCATTTTCAACTTGGGAAAAGGAGCTGCCAAAAATAGTATTTGATCCCAGATTTTTACTGCTGACCCAGAAGGAACGGAAGCAGTGTTTTGAAAAGTTTGTACGCACTCGTGCTGATGAGGAAAGACAAGAAAGAAAGAGCAAACTCAAAGCTAAGAAAGATGAGTTTAAAGCTTTGGTGGAAGAGGCTAGAACTGCTGGAAAGACAACTTTCAGTGAATTTGCTATGAAGTATGGAAAGGATGATCGATTCAAAGGCATAGAAAAGATGAAGGACCGAGAGAATCTGTTTACAGAGTTCCTGGCCGAGCTAAAGAAGAAGGAGAAAGAGAGTCTAAAACTCAAGCAGGATAAGGTTGGTTTCTTGTTCCTATGGGGAGGCATGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CGF7	Transcription elongation regulator 1 OS=Mus musculus OX=10090 GN=Tcerg1 PE=1 SV=2
O14776	Transcription elongation regulator 1 OS=Homo sapiens OX=9606 GN=TCERG1 PE=1 SV=2
Q3B807	Transcription elongation regulator 1-like protein OS=Mus musculus OX=10090 GN=Tcerg1l PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003454 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00397 all species →	WW	WW domain	Domain	Interproscan
PF01846 all species →	FF	FF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002713 all species →	Domain	FF domain	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR036517 all species →	Homologous_superfamily	FF domain superfamily	Interproscan
IPR045148 all species →	Family	Transcription elongation regulator 1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15377 all species →	TRANSCRIPTION ELONGATION REGULATOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0070063 all species →	Molecular Function	RNA polymerase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.135.1.5f15dcd3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.