Gene detail

Detailed information of evm.model.Ap2.137 in Astrangia poculata

Genomic Location: Ap2:1089646...1103897
NR annotation: KAJ7378864.1, hypothetical protein OS493_020466 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.137

atggatttccgcgatttttcaaaacaaggaactcaacattcgactggaccgtggattcaaacaccgacgttttcatcaaggcggcaaagaaatgaacctattgcttggaaagaagtgttagaggatcctggagaatgcaaaaatcccattttgctgtcagaaccaggtcagagagtggtcagagcaataagggaaatttatggagcacgacaagggatgagtggtcactgtacaccacaacaagtagcctcagaatattatcaccagagatcacaggatgcaccaaggaggcaactaagttttcctgaaaatcgcagacttgatgaaaataacgatgatcagaagctaagcacggcaccgccttgtggtatacagcaaaggttacaagcaaatgcggcagcccccagaaatgtgtcttcatcccagactggagaagaagaatcaccttactccaccaaaacagacgactcgtcgtctacaaagggacaaaacgactcaaggagaaaaactgaaagcgcgaacaagaggaaagcacagcagagtcccatcactgattatttcaaggaaagaaaagctgttcaagtaaacgaggccaagaaagctaaacaagcagtcacagaaactctacttaatgaaaatgtcagcaagaatcaaaacggaaggatgataaaaacatgcaaaactgggcttgtaaaactttcgtcgatgagtccaagccaaagagaagtgtttgaacagaacctcaaatcagcggaggaggttgcttgtactctggtttatgaagaaggatggtcgctgttaagaccgaagaaacaacaaaaaacgaagaaaacagtagaggacttcgcaagcaaaaaggttgctagcctggttgtagcactaccttgggctgagatgacttcgactaccactgattctgcacaaggccgtaaaaatcgactgaagttcgtggaaattcctctagatacaacggacgatgctttcacaaagtggtgcagagaagtggtggattatctaatgacatcgtcatcgacaaggaaaatctgctttgatgcacagaaaatagttcggtatcttgtagagacgacgcattttgacaacagaacagtctgcctcaagtggcgtcttcttgatccaaaaattgcagcttggctactgaacccggaccaccctcctcagacctttgccgagattcttgcgtcagtccagctccgatttccagagagtgcggaagatgatgatgatgatatggtttgtcaggatattgcgatgcttggccctctcatgatgaaacaatatagcaagcttaaggcgctatcactctgggacttgttcatcgccatagagaccccactttgctccatgctagcagttatggaaactcaaggaattggaattaactcccaggtcttgatcgaagccagcaatactctcaagataaaaattcaaaaggtggaagcagaagcccacaaagctgcggggcatccttttcttattaacagtcctcaacagttgagagaggtgctgtttgaagagctgagacttgaccaaaaatgcaacaagaagctagcgagaacaacaatcaagaactacaagtccacctcagaagctgtgttacttcacctgcaagagtttcacccattgccaaagcttgttctacagtacagacatcttgtaaaattgaagtcaacttattttgacggaatactttctcatgtccatgagggagctctgttaacaagctgggaccaaacggccgccgctactggacgacttacgtcagcaaatccaaaccttcaggctatcccaaaacaagtcatagaagtgtctggaatcaagaaacagctcattgtaggcaaaccagaagaggtggtaaccatttatgcacgggatgcttacaggagtagagaaggctggttattacttgcagcagatttccagtccattgagcttcgcctactgtctcacctgtctgaggacccgtcgctgatacagatcttcaatgacaaacactgtacagacgtatttacaacccttgcctcacagtggttgggcaaaagctgcgaagaagtccagtttcacgagagagaaagaaccaaacgaattgtatattctgttatctacggtgtcggaagtgaaaaactcggacacaccctcaaagtaagtgccgaggaagcaaaaggattcatggagagctttttaggttacgtgtccaccattttgaacagaaggcgttggctgccacatatcaagtcttatgatttcacccaacgatcgcaggctgaacggcaggctgtcaattttatcgtgcagggttcagccgcggacatatgtaaggcagcaatgattcaagtcataagcgccataagcgaggacacttccgtgcatgcaagattgctgttacaaatacatgatgaacttcttctggaggttcctgagaatgaaatcaagaaagtgacagcaagcgtcaaatcgatcatggagtctacagagaaactgtgtggagggaaaattcagctgaaggtacctctccctgtatctatcagcattggacagacatggggacacatggagaccttcactgcttga

Transcript

evm.model.Ap2.137

ATGGATTTCCGCGATTTTTCAAAACAAGGAACTCAACATTCGACTGGACCGTGGATTCAAACACCGACGTTTTCATCAAGGCGGCAAAGAAATGAACCTATTGCTTGGAAAGAAGTGTTAGAGGATCCTGGAGAATGCAAAAATCCCATTTTGCTGTCAGAACCAGGTCAGAGAGTGGTCAGAGCAATAAGGGAAATTTATGGAGCACGACAAGGGATGAGTGGTCACTGTACACCACAACAAGTAGCCTCAGAATATTATCACCAGAGATCACAGGATGCACCAAGGAGGCAACTAAGTTTTCCTGAAAATCGCAGACTTGATGAAAATAACGATGATCAGAAGCTAAGCACGGCACCGCCTTGTGGTATACAGCAAAGGTTACAAGCAAATGCGGCAGCCCCCAGAAATGTGTCTTCATCCCAGACTGGAGAAGAAGAATCACCTTACTCCACCAAAACAGACGACTCGTCGTCTACAAAGGGACAAAACGACTCAAGGAGAAAAACTGAAAGCGCGAACAAGAGGAAAGCACAGCAGAGTCCCATCACTGATTATTTCAAGGAAAGAAAAGCTGTTCAAGTAAACGAGGCCAAGAAAGCTAAACAAGCAGTCACAGAAACTCTACTTAATGAAAATGTCAGCAAGAATCAAAACGGAAGGATGATAAAAACATGCAAAACTGGGCTTGTAAAACTTTCGTCGATGAGTCCAAGCCAAAGAGAAGTGTTTGAACAGAACCTCAAATCAGCGGAGGAGGTTGCTTGTACTCTGGTTTATGAAGAAGGATGGTCGCTGTTAAGACCGAAGAAACAACAAAAAACGAAGAAAACAGTAGAGGACTTCGCAAGCAAAAAGGTTGCTAGCCTGGTTGTAGCACTACCTTGGGCTGAGATGACTTCGACTACCACTGATTCTGCACAAGGCCGTAAAAATCGACTGAAGTTCGTGGAAATTCCTCTAGATACAACGGACGATGCTTTCACAAAGTGGTGCAGAGAAGTGGTGGATTATCTAATGACATCGTCATCGACAAGGAAAATCTGCTTTGATGCACAGAAAATAGTTCGGTATCTTGTAGAGACGACGCATTTTGACAACAGAACAGTCTGCCTCAAGTGGCGTCTTCTTGATCCAAAAATTGCAGCTTGGCTACTGAACCCGGACCACCCTCCTCAGACCTTTGCCGAGATTCTTGCGTCAGTCCAGCTCCGATTTCCAGAGAGTGCGGAAGATGATGATGATGATATGGTTTGTCAGGATATTGCGATGCTTGGCCCTCTCATGATGAAACAATATAGCAAGCTTAAGGCGCTATCACTCTGGGACTTGTTCATCGCCATAGAGACCCCACTTTGCTCCATGCTAGCAGTTATGGAAACTCAAGGAATTGGAATTAACTCCCAGGTCTTGATCGAAGCCAGCAATACTCTCAAGATAAAAATTCAAAAGGTGGAAGCAGAAGCCCACAAAGCTGCGGGGCATCCTTTTCTTATTAACAGTCCTCAACAGTTGAGAGAGGTGCTGTTTGAAGAGCTGAGACTTGACCAAAAATGCAACAAGAAGCTAGCGAGAACAACAATCAAGAACTACAAGTCCACCTCAGAAGCTGTGTTACTTCACCTGCAAGAGTTTCACCCATTGCCAAAGCTTGTTCTACAGTACAGACATCTTGTAAAATTGAAGTCAACTTATTTTGACGGAATACTTTCTCATGTCCATGAGGGAGCTCTGTTAACAAGCTGGGACCAAACGGCCGCCGCTACTGGACGACTTACGTCAGCAAATCCAAACCTTCAGGCTATCCCAAAACAAGTCATAGAAGTGTCTGGAATCAAGAAACAGCTCATTGTAGGCAAACCAGAAGAGGTGGTAACCATTTATGCACGGGATGCTTACAGGAGTAGAGAAGGCTGGTTATTACTTGCAGCAGATTTCCAGTCCATTGAGCTTCGCCTACTGTCTCACCTGTCTGAGGACCCGTCGCTGATACAGATCTTCAATGACAAACACTGTACAGACGTATTTACAACCCTTGCCTCACAGTGGTTGGGCAAAAGCTGCGAAGAAGTCCAGTTTCACGAGAGAGAAAGAACCAAACGAATTGTATATTCTGTTATCTACGGTGTCGGAAGTGAAAAACTCGGACACACCCTCAAAGTAAGTGCCGAGGAAGCAAAAGGATTCATGGAGAGCTTTTTAGGTTACGTGTCCACCATTTTGAACAGAAGGCGTTGGCTGCCACATATCAAGTCTTATGATTTCACCCAACGATCGCAGGCTGAACGGCAGGCTGTCAATTTTATCGTGCAGGGTTCAGCCGCGGACATATGTAAGGCAGCAATGATTCAAGTCATAAGCGCCATAAGCGAGGACACTTCCGTGCATGCAAGATTGCTGTTACAAATACATGATGAACTTCTTCTGGAGGTTCCTGAGAATGAAATCAAGAAAGTGACAGCAAGCGTCAAATCGATCATGGAGTCTACAGAGAAACTGTGTGGAGGGAAAATTCAGCTGAAGGTACCTCTCCCTGTATCTATCAGCATTGGACAGACATGGGGACACATGGAGACCTTCACTGCTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TQ07	DNA polymerase nu OS=Mus musculus OX=10090 GN=Poln PE=2 SV=2
Q7Z5Q5	DNA polymerase nu OS=Homo sapiens OX=9606 GN=POLN PE=1 SV=2
P19821	DNA polymerase I, thermostable OS=Thermus aquaticus OX=271 GN=polA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008336 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00476 all species →	DNA_pol_A	DNA polymerase family A	Family	Interproscan
PF18049 all species →	DNA_pol_P_Exo	DNA polymerase nu pseudo-exo	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002298 all species →	Family	DNA polymerase A	Interproscan
IPR001098 all species →	Domain	DNA-directed DNA polymerase, family A, palm domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR040940 all species →	Domain	DNA polymerase nu, pseudo-exo domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10133 all species →	DNA POLYMERASE I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006261 all species →	Biological Process	DNA-templated DNA replication	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0097681 all species →	Biological Process	double-strand break repair via alternative nonhomologous end joining	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16618	POLN; DNA polymerase nu	EC:2.7.7.7	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.