Gene detail

Detailed information of evm.model.Ap2.1388 in Astrangia poculata

Genomic Location: Ap2:14323563...14324996
NR annotation: XP_020618828.1, uncharacterized protein LOC110056655 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P31851	Protein TabA OS=Pseudomonas amygdali pv. tabaci OX=322 GN=tabA PE=3 SV=1
O27390	Diaminopimelate decarboxylase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=lysA PE=3 SV=1
Q6ZG77	Probable diaminopimelate decarboxylase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=LYSA PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011536 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02784 all species →	Orn_Arg_deC_N	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	Domain	Interproscan
PF00278 all species →	Orn_DAP_Arg_deC	Pyridoxal-dependent decarboxylase, C-terminal sheet domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029066 all species →	Homologous_superfamily	PLP-binding barrel	Interproscan
IPR009006 all species →	Homologous_superfamily	Alanine racemase/group IV decarboxylase, C-terminal	Interproscan
IPR002986 all species →	Family	Diaminopimelate decarboxylase, LysA	Interproscan
IPR022657 all species →	Conserved_site	Orn/DAP/Arg decarboxylase 2, conserved site	Interproscan
IPR022644 all species →	Domain	Orn/DAP/Arg decarboxylase 2, N-terminal	Interproscan
IPR000183 all species →	Family	Ornithine/DAP/Arg decarboxylase	Interproscan
IPR022643 all species →	Domain	Orn/DAP/Arg decarboxylase 2, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43727 all species →	DIAMINOPIMELATE DECARBOXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0008836 all species →	Molecular Function	diaminopimelate decarboxylase activity	Interproscan
GO:0009089 all species →	Biological Process	lysine biosynthetic process via diaminopimelate	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.1388.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.