Gene detail

Detailed information of evm.model.Ap2.1425 in Astrangia poculata

Genomic Location: Ap2:14846304...14858758
NR annotation: XP_020623858.1, deleted in malignant brain tumors 1 protein-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.1425

atgtcgtgtattttgcttcttgcattcctgtcggccttgaggcttgtcagcagctctgaggtgagactagttggaggaaagcacgcgtatgaaggcagagtcgaagtgaaatacgacagtgaatggaaagcgatttgtgatcacggatggaacatgaaagcggccaatgtggtttgtcgtatgcttggttatccagaggcgctgcgttataccacaggacatactgcctatggtcgcggtgatggacacttctggttagatgacgtcaattgtggtggaagagaatacgacattgaacgatgttctcatagagactggggacgacacaactgtcgttcaacgaatcaagctggtgttatatgtaaactacatcgaagtgacgtgatctttgcgcccgagccatcgccagccagcggtgaggttataaacgtgaatgtaaagctaattggtccgattgttgatgactacatatcggagggtatcgtccaagtggagcacgagggaaagtggggatacatttgtccttctaaatggacacgtgctaactcgtacgtattatgcggtcagctgggatttcctaacgccgaggagctagagtcttacacggagaccattcaggattcggagcccgtctattggctggaccaggtcacgtgtaaagggtgggagtcatcgatcgtgtcatgtgaccatgcagggtgggttcggcaccggtgtgaaggtggaaaggctctgaagattaaatgtgcgcgcaaaaacattacgcaaacacccgaggtacgacttcgcagcggggctctggtcggcgaaggacgagttgagctgtatagagcaaaaggacgagtagagcactggggcactgtgtgtgacgatcactggaccttaagggaagctaatgtcgtctgcaggtctttaggttacgggtcagcggcaatagcagcaaagaacgcctattttgggagaggaattggagaggtcatacttcataatttacaatgtctaggagtcgagaggaatatcagtcattgcaaacatcagggatggcgtagatcaaagtgcaatcattatgaggatgctagtgtcaaatgtcatgtaccacagcttcaaggccataagattcggcttagtggtggtcttaactcttatgagggtcgcgttgaagtttttcacggcggtatttggggaacggtttgcgcagataactggcgtatagaagaagcgatggtagcatgccgacagttgaatctcggatatgccagccatgctatcacgcaaaactatttcggtcccaccaatctcagagtggccatgtctggagtgatatgtcgagtggacgagatctccatttataattgtcaacatgatccatgggaaaatgcaacgtgcagcaacaggaataaattagcaggactcatttgtgtagacgaattaccagatctcgtacttgataccgatgcactgaaggaggagatgcgattggatttccagcctctgcacgctctgcaatgcgcattcgaagaaaactgtcttgcaaaaagcgctgatgtacttttcaggcctgaaaatagtcggtataatcgatttaatcgacgaagtctattgaggtttacagctaagatcgaaaaccgaggatgggatcacttcagacccaacacacccatgtcaggctgggaatatcatcagtgtcatgcgcattatcactccatggagacatttgccagctatgaactgctacgtcagggtaactatgtgaggcgagcccaaggccacaaagccagtttctgtttagaagacacagaatgtgatccgggatttgagaaaaggtggaattgtaccaggggcggtgaccaaggcctatctcccggatgttttgatatctacagctctaagattgactgtcagtgggtggactgtacaggcattagacaaggttccttttaccttcgagtccagctcaatcctgggaaccaagtggctgaatcagatttcaagaacaacgttgcgaagtgtacagtgtatcattatgggagtttcgtcattgctaacaagtgctggatcgagacttgtgaaagtggtgtagacacatatggcgggaattcagccggtaaatgctgcacaaaaaatggggactttgttttaactaggaaagtaaaaagacctgaatggactgcattacactggaagtccagcatctttaacaaagcttctccatgttcaactcaaattcttcggacaaagagttattttaaaatatatgagcattag

Transcript

evm.model.Ap2.1425

ATGTCGTGTATTTTGCTTCTTGCATTCCTGTCGGCCTTGAGGCTTGTCAGCAGCTCTGAGGTGAGACTAGTTGGAGGAAAGCACGCGTATGAAGGCAGAGTCGAAGTGAAATACGACAGTGAATGGAAAGCGATTTGTGATCACGGATGGAACATGAAAGCGGCCAATGTGGTTTGTCGTATGCTTGGTTATCCAGAGGCGCTGCGTTATACCACAGGACATACTGCCTATGGTCGCGGTGATGGACACTTCTGGTTAGATGACGTCAATTGTGGTGGAAGAGAATACGACATTGAACGATGTTCTCATAGAGACTGGGGACGACACAACTGTCGTTCAACGAATCAAGCTGGTGTTATATGTAAACTACATCGAAGTGACGTGATCTTTGCGCCCGAGCCATCGCCAGCCAGCGGTGAGGTTATAAACGTGAATGTAAAGCTAATTGGTCCGATTGTTGATGACTACATATCGGAGGGTATCGTCCAAGTGGAGCACGAGGGAAAGTGGGGATACATTTGTCCTTCTAAATGGACACGTGCTAACTCGTACGTATTATGCGGTCAGCTGGGATTTCCTAACGCCGAGGAGCTAGAGTCTTACACGGAGACCATTCAGGATTCGGAGCCCGTCTATTGGCTGGACCAGGTCACGTGTAAAGGGTGGGAGTCATCGATCGTGTCATGTGACCATGCAGGGTGGGTTCGGCACCGGTGTGAAGGTGGAAAGGCTCTGAAGATTAAATGTGCGCGCAAAAACATTACGCAAACACCCGAGGTACGACTTCGCAGCGGGGCTCTGGTCGGCGAAGGACGAGTTGAGCTGTATAGAGCAAAAGGACGAGTAGAGCACTGGGGCACTGTGTGTGACGATCACTGGACCTTAAGGGAAGCTAATGTCGTCTGCAGGTCTTTAGGTTACGGGTCAGCGGCAATAGCAGCAAAGAACGCCTATTTTGGGAGAGGAATTGGAGAGGTCATACTTCATAATTTACAATGTCTAGGAGTCGAGAGGAATATCAGTCATTGCAAACATCAGGGATGGCGTAGATCAAAGTGCAATCATTATGAGGATGCTAGTGTCAAATGTCATGTACCACAGCTTCAAGGCCATAAGATTCGGCTTAGTGGTGGTCTTAACTCTTATGAGGGTCGCGTTGAAGTTTTTCACGGCGGTATTTGGGGAACGGTTTGCGCAGATAACTGGCGTATAGAAGAAGCGATGGTAGCATGCCGACAGTTGAATCTCGGATATGCCAGCCATGCTATCACGCAAAACTATTTCGGTCCCACCAATCTCAGAGTGGCCATGTCTGGAGTGATATGTCGAGTGGACGAGATCTCCATTTATAATTGTCAACATGATCCATGGGAAAATGCAACGTGCAGCAACAGGAATAAATTAGCAGGACTCATTTGTGTAGACGAATTACCAGATCTCGTACTTGATACCGATGCACTGAAGGAGGAGATGCGATTGGATTTCCAGCCTCTGCACGCTCTGCAATGCGCATTCGAAGAAAACTGTCTTGCAAAAAGCGCTGATGTACTTTTCAGGCCTGAAAATAGTCGGTATAATCGATTTAATCGACGAAGTCTATTGAGGTTTACAGCTAAGATCGAAAACCGAGGATGGGATCACTTCAGACCCAACACACCCATGTCAGGCTGGGAATATCATCAGTGTCATGCGCATTATCACTCCATGGAGACATTTGCCAGCTATGAACTGCTACGTCAGGGTAACTATGTGAGGCGAGCCCAAGGCCACAAAGCCAGTTTCTGTTTAGAAGACACAGAATGTGATCCGGGATTTGAGAAAAGGTGGAATTGTACCAGGGGCGGTGACCAAGGCCTATCTCCCGGATGTTTTGATATCTACAGCTCTAAGATTGACTGTCAGTGGGTGGACTGTACAGGCATTAGACAAGGTTCCTTTTACCTTCGAGTCCAGCTCAATCCTGGGAACCAAGTGGCTGAATCAGATTTCAAGAACAACGTTGCGAAGTGTACAGTGTATCATTATGGGAGTTTCGTCATTGCTAACAAGTGCTGGATCGAGACTTGTGAAAGTGGTGTAGACACATATGGCGGGAATTCAGCCGGTAAATGCTGCACAAAAAATGGGGACTTTGTTTTAACTAGGAAAGTAAAAAGACCTGAATGGACTGCATTACACTGGAAGTCCAGCATCTTTAACAAAGCTTCTCCATGTTCAACTCAAATTCTTCGGACAAAGAGTTATTTTAAAATATATGAGCATTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1RD85	Lysyl oxidase homolog 3A OS=Danio rerio OX=7955 GN=loxl3a PE=2 SV=1
A1L1V4	Lysyl oxidase homolog 2B OS=Danio rerio OX=7955 GN=loxl2b PE=2 SV=1
Q08B63	Lysyl oxidase homolog 2 OS=Xenopus laevis OX=8355 GN=loxl2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001610 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01186 all species →	Lysyl_oxidase	Lysyl oxidase	Family	Interproscan
PF00530 all species →	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001190 all species →	Domain	SRCR domain	Interproscan
IPR036772 all species →	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR017448 all species →	Domain	SRCR-like domain	Interproscan
IPR001695 all species →	Family	Lysyl oxidase	Interproscan
IPR050912 all species →	Family	Lysyl oxidase-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45817 all species →	LYSYL OXIDASE-LIKE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0016641 all species →	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	Interproscan
GO:0004720 all species →	Molecular Function	protein-lysine 6-oxidase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0018057 all species →	Biological Process	peptidyl-lysine oxidation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.1425.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.