Gene detail

Detailed information of evm.model.Ap2.1426 in Astrangia poculata

Genomic Location: Ap2:14860915...14871327
NR annotation: CAH3142109.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.1426

atgaattggattttactgggagtcgtgttgacgagccttgagatttcaacaggcatcgaggttcgcctgctaaaaggaaagcatcattacgagggacgaatcgaggttaactacaaaggcacgtggagagcggtctgtgatcacggatggaacaggaacgcagctcgagtcgtctgccgcatgcttgggtttcctgatgtgctgcgctttaccaaagggcaacatgcattcggtcatggcaatggaagattctggcttgatgacgtcaaatgcactgggaacgaggagtccattgacgagtgcacccacaggccctggggccgacacaactgtctctcatacaatcaagctggtgttgtctgcagaatgcatgcggatgacgtaatttttgatcccaagccttcaaacgccagcggcgaggtttcaaaagtccaaattaagttaattggtccggtcgtcaatgactacatatcagaaggtatcgttcaagtggagcacgagggaaagtggggttacatttgtccttctaaatggacacgcgctaactcgtacgtgttgtgtggtcagctgggatttccgaacttcgagctgtcttctgcagtgaccattcaggatgcggagcccgtctattggctggaccatgtgacgtgtaaagggtgggagtcatcgattgtgtcatgtgaccatgcaggctggggccctcatcagtgtgaggatggcggagttttaaggatcaaatgcgttagacgaaaaataactaagcccttggaggttcgactacgaagcggagccttggtctccgaaggacgtgtagaggtgcagtatcaccaatactggggctcaatatgtgatgaccactggaccctgaaggaagctaacgtagtctgcaggtcattgggctacgggtcagcggcgatggcagcaaagaatgcgtactatggacgaggaataggaagggtcatgcttgatgaagtcttctgtagggggacggaaaagagcatcacgctctgcaagcaccgaggctggcgcgcgtcagactgcaatcattatgaagacgctagtgtcaaatgtcacgtgccagcgcttcaagggcatgaggttcgcatccgaggtggcgcaaaccctttcgagggtcgagttgaagtctttcatgatggcaaatggggaaccgtctgtgctgacgaatggggtatagaggaagccatgacagtttgccgacagctgaatctcgggtatgcaagtgatgccgtcacccagaataacttcagtgaaacagatcttgaagtaatcatgtctggagttaaatgccgagtggacgagatctccatttacaactgtcagcatgacgagtgggcaaacaccacttgcagcagcaagaagaaatcagcaggagttatttgtgttaatgctttgcctgaccttgtactcgacacggatattcttagaactcagatgcagatgtctgctattccgttagtgtacctgaaatgtgccatggaagaaaattgtctcgctaaaagtgctgcaattcaaataagatattcagaagcgtaccaaaggagactgctacgattcagtgttaaggttgaaaatcgaggattggatcacttcagaccaaaagctgacaagtcaacctggcaatggcacaaatgccaccagcactatcactccatggaaacgttctctacttatgatcttattcgccagaataccggagaaaaggttgctcagggacacaaggccagtttttgtttggaagacacgaagtgcgaccccggtttcgaacaagtttggaactgtaccgaccggggagatcaaggggtatccccgggctgttacgatatttattactggaatatcgactgccagtgggtggattgtaccgactttgtgcacggtgcgttttaccttcgcgttcatctgaaccctggaaaccaagtggccgaatccgacttcagaaacaacgttgccaaatgctccgtgtacgattatggcagctacgttattactaacaggtgctggattgaggactgcgagagcggaatcgatacgcatgccgggaattctggagggaactgctgtgtgtttccttttcttttcaatggtaaactctatcacgactgtactatggatgggttcaggaaaaagtggtgctccacgacctataacttcagcaacgacagaaagtggggactttgttacaattag

Transcript

evm.model.Ap2.1426

ATGAATTGGATTTTACTGGGAGTCGTGTTGACGAGCCTTGAGATTTCAACAGGCATCGAGGTTCGCCTGCTAAAAGGAAAGCATCATTACGAGGGACGAATCGAGGTTAACTACAAAGGCACGTGGAGAGCGGTCTGTGATCACGGATGGAACAGGAACGCAGCTCGAGTCGTCTGCCGCATGCTTGGGTTTCCTGATGTGCTGCGCTTTACCAAAGGGCAACATGCATTCGGTCATGGCAATGGAAGATTCTGGCTTGATGACGTCAAATGCACTGGGAACGAGGAGTCCATTGACGAGTGCACCCACAGGCCCTGGGGCCGACACAACTGTCTCTCATACAATCAAGCTGGTGTTGTCTGCAGAATGCATGCGGATGACGTAATTTTTGATCCCAAGCCTTCAAACGCCAGCGGCGAGGTTTCAAAAGTCCAAATTAAGTTAATTGGTCCGGTCGTCAATGACTACATATCAGAAGGTATCGTTCAAGTGGAGCACGAGGGAAAGTGGGGTTACATTTGTCCTTCTAAATGGACACGCGCTAACTCGTACGTGTTGTGTGGTCAGCTGGGATTTCCGAACTTCGAGCTGTCTTCTGCAGTGACCATTCAGGATGCGGAGCCCGTCTATTGGCTGGACCATGTGACGTGTAAAGGGTGGGAGTCATCGATTGTGTCATGTGACCATGCAGGCTGGGGCCCTCATCAGTGTGAGGATGGCGGAGTTTTAAGGATCAAATGCGTTAGACGAAAAATAACTAAGCCCTTGGAGGTTCGACTACGAAGCGGAGCCTTGGTCTCCGAAGGACGTGTAGAGGTGCAGTATCACCAATACTGGGGCTCAATATGTGATGACCACTGGACCCTGAAGGAAGCTAACGTAGTCTGCAGGTCATTGGGCTACGGGTCAGCGGCGATGGCAGCAAAGAATGCGTACTATGGACGAGGAATAGGAAGGGTCATGCTTGATGAAGTCTTCTGTAGGGGGACGGAAAAGAGCATCACGCTCTGCAAGCACCGAGGCTGGCGCGCGTCAGACTGCAATCATTATGAAGACGCTAGTGTCAAATGTCACGTGCCAGCGCTTCAAGGGCATGAGGTTCGCATCCGAGGTGGCGCAAACCCTTTCGAGGGTCGAGTTGAAGTCTTTCATGATGGCAAATGGGGAACCGTCTGTGCTGACGAATGGGGTATAGAGGAAGCCATGACAGTTTGCCGACAGCTGAATCTCGGGTATGCAAGTGATGCCGTCACCCAGAATAACTTCAGTGAAACAGATCTTGAAGTAATCATGTCTGGAGTTAAATGCCGAGTGGACGAGATCTCCATTTACAACTGTCAGCATGACGAGTGGGCAAACACCACTTGCAGCAGCAAGAAGAAATCAGCAGGAGTTATTTGTGTTAATGCTTTGCCTGACCTTGTACTCGACACGGATATTCTTAGAACTCAGATGCAGATGTCTGCTATTCCGTTAGTGTACCTGAAATGTGCCATGGAAGAAAATTGTCTCGCTAAAAGTGCTGCAATTCAAATAAGATATTCAGAAGCGTACCAAAGGAGACTGCTACGATTCAGTGTTAAGGTTGAAAATCGAGGATTGGATCACTTCAGACCAAAAGCTGACAAGTCAACCTGGCAATGGCACAAATGCCACCAGCACTATCACTCCATGGAAACGTTCTCTACTTATGATCTTATTCGCCAGAATACCGGAGAAAAGGTTGCTCAGGGACACAAGGCCAGTTTTTGTTTGGAAGACACGAAGTGCGACCCCGGTTTCGAACAAGTTTGGAACTGTACCGACCGGGGAGATCAAGGGGTATCCCCGGGCTGTTACGATATTTATTACTGGAATATCGACTGCCAGTGGGTGGATTGTACCGACTTTGTGCACGGTGCGTTTTACCTTCGCGTTCATCTGAACCCTGGAAACCAAGTGGCCGAATCCGACTTCAGAAACAACGTTGCCAAATGCTCCGTGTACGATTATGGCAGCTACGTTATTACTAACAGGTGCTGGATTGAGGACTGCGAGAGCGGAATCGATACGCATGCCGGGAATTCTGGAGGGAACTGCTGTGTGTTTCCTTTTCTTTTCAATGGTAAACTCTATCACGACTGTACTATGGATGGGTTCAGGAAAAAGTGGTGCTCCACGACCTATAACTTCAGCAACGACAGAAAGTGGGGACTTTGTTACAATTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RFQ6	Lysyl oxidase homolog 2 OS=Pongo abelii OX=9601 GN=LOXL2 PE=2 SV=1
P58022	Lysyl oxidase homolog 2 OS=Mus musculus OX=10090 GN=Loxl2 PE=1 SV=2
F1QQC3	Lysyl oxidase homolog 2A OS=Danio rerio OX=7955 GN=loxl2a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001610 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01186 all species →	Lysyl_oxidase	Lysyl oxidase	Family	Interproscan
PF00530 all species →	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan
PF00040 all species →	fn2	Fibronectin type II domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001695 all species →	Family	Lysyl oxidase	Interproscan
IPR017448 all species →	Domain	SRCR-like domain	Interproscan
IPR036772 all species →	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR001190 all species →	Domain	SRCR domain	Interproscan
IPR000562 all species →	Domain	Fibronectin type II domain	Interproscan
IPR019828 all species →	Conserved_site	Lysyl oxidase, conserved site	Interproscan
IPR050912 all species →	Family	Lysyl oxidase-like protein	Interproscan
IPR036943 all species →	Homologous_superfamily	Fibronectin type II domain superfamily	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45817 all species →	LYSYL OXIDASE-LIKE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0016641 all species →	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004720 all species →	Molecular Function	protein-lysine 6-oxidase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0018057 all species →	Biological Process	peptidyl-lysine oxidation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00280	LOXL2_3_4; lysyl oxidase-like protein 2/3/4	EC:1.4.3.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.