Detailed information of evm.model.Ap2.1433 in Astrangia poculata

Genomic Location: Ap2:14932230...14940942
NR annotation: XP_020623818.1, DNA replication complex GINS protein SLD5-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q99LZ3DNA replication complex GINS protein SLD5 OS=Mus musculus OX=10090 GN=Gins4 PE=1 SV=1
Q499W2DNA replication complex GINS protein SLD5 OS=Rattus norvegicus OX=10116 GN=Gins4 PE=1 SV=1
Q7ZT48DNA replication complex GINS protein SLD5 OS=Xenopus laevis OX=8355 GN=gins4 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007052 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16922
all species →		SLD5_CDNA replication complex GINS protein SLD5 C-terminusDomainInterproscan
PF05916
all species →		Sld5GINS complex proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR031633
all species →		DomainDNA replication complex GINS protein SLD5, C-terminalInterproscan
IPR038749
all species →		DomainGINS complex protein Sld5, alpha-helical domainInterproscan
IPR008591
all species →		FamilyGINS complex subunit Sld5Interproscan
IPR021151
all species →		DomainGINS subunit, domain AInterproscan
IPR036224
all species →		Homologous_superfamilyGINS, helical bundle-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21206
all species →		SLD5 PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000727
all species →		Biological Processdouble-strand break repair via break-induced replicationInterproscan
GO:0000811
all species →		Cellular ComponentGINS complexInterproscan
GO:0006261
all species →		Biological ProcessDNA-templated DNA replicationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10735GINS4, SLD5; GINS complex subunit 4-DNA replication proteinsko03032deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP